Guru
Yes please include, in fact they may be all that is needed? They represent the assembled
contigs and scaffolds that were linked to the genetic map and this represent the
chromosomes... I believe that they contain most of the contigs and scaffolds so there is
redundancy. there is one Tc0 that represents the unassembled contigs and scaffolds left
over after assembling the 10 pseudochromosomes that represent each of the 10 cacao
chromosomes. Yopu could see how this is on the gbrowse at the below website.
Regards
Mark
On Jan 26, 2012, at 10:39 AM, Guru Ananda wrote:
Dear Mark,
Sorry for the delay in response.
We're wondering whether or not to include pseudomolecules (along with contigs and
scaffolds) as genomic sequence for cacao genome. Can you kindly clarify this?
Thanks,
Guru.
On Thu, Oct 27, 2011 at 4:08 PM, Mark Guiltinan <mjg9(a)psu.edu> wrote:
Hello Galaxy,
Would you please perform the following new genome load?
Theobroma cacao
All the necessary resource files can be found and downloaded at:
http://cocoagendb.cirad.fr/gbrowse/download.html
Thank you
Mark Guiltinan
Mark Guiltinan
Professor of Plant Molecular Biology
Penn State University
Department of Horticulture
422 Life Sciences Building
University Park, PA 16802-5807
Phone 814 863-7957
mjg9(a)psu.edu
Web Site:
http://guiltinanlab.cas.psu.edu
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