Set yourself up as a Galaxy admin, in universe_wsgi.ini, add your galaxy
account ( email ) to the following:
# this should be a comma-separated list of valid Galaxy users
admin_users = you(a)youremail.edu
You'll see an Admin link in the top Galaxy menu bar when you restart
your Galaxy sever after making this change. Click on it, and you be
presented with teh Galaxy Admin UI. Look for the "Manage data
libraries" link in th left panel, create a new data library, and you can
upload datasets to using 1 of 4 options, including this latest option
just introduced.
Greg Von Kuster
Galaxy Development Team
Abhishek Pratap wrote:
I think that could be it. I am using the "Upload File "
option under
the "Get Data" from the left hand menu. Sorry for the confusion if I
am doing something that I am not supposed to. How do we upload data to
data library ?
-Abhi
On Fri, Oct 2, 2009 at 3:46 PM, Greg Von Kuster <ghv2(a)psu.edu> wrote:
> Ok, you have the change set.  Perhaps you are trying to upload into a
> history rather than a Data Library?  This new feature is only available for
> uploading into a Data Library.  Can you confirm?  I'm not sure what else
> could be causing you to not see the 4 options on the drop-down menu for
> uploading dataset into a Data Library.
>
> Greg
>
> Abhishek Pratap wrote:
>> Here it is :
>>
>>> hg heads
>>
>> changeset:  2824:d97f4e86be45
>> tag:     tip
>> parent:    2823:2c0c81150dbd
>> parent:    2821:04a753865407
>> user:     Anton Nekrutenko <anton(a)bx.psu.edu>
>> date:     Fri Oct 02 11:02:14 2009 -0400
>> summary:   merge
>>
>> -Abhi
>>
>> On Fri, Oct 2, 2009 at 3:30 PM, Greg Von Kuster <ghv2(a)psu.edu> wrote:
>>> Please type the following in your galaxy install directory, and let me
>>> know
>>> what you get:
>>>
>>> hg heads
>>>
>>>
>>> Thanks
>>>
>>> Abhishek Pratap wrote:
>>>> Hi Greg
>>>>
>>>> Unfortunately it is not working for me. I made sure I cleared my
>>>> browser cache before re-viewing it.
>>>>
>>>> I have set the option as suggested by you in the universe_wsgi.ini file.
>>>>
>>>> -Abhi
>>>>
>>>> On Fri, Oct 2, 2009 at 2:53 PM, Greg Von Kuster <ghv2(a)psu.edu>
wrote:
>>>>> Hello Abhishek,
>>>>>
>>>>> Add this to your universe_wsgi.ini file:
>>>>>
>>>>> allow_library_path_paste = True
>>>>>
>>>>> Then, clicking the down-arrow on the upload form
>>>>>
>>>>> Create new data library datasets ¬¨¬®‚Äö√тĆ‚Äö√Ñ√∂‚à ö¬±¬¨‚à ´
>>>>>
>>>>> will give you 4 options, 1 of which is:
>>>>>
>>>>> Upload files from file system paths
>>>>>
>>>>> Greg Von Kuster
>>>>> Galaxy Development Team
>>>>>
>>>>>
>>>>> Abhishek Pratap wrote:
>>>>>> Hi Greg
>>>>>>
>>>>>> I have updated my galaxy rep to changeset 2825. I dont see the
>>>>>> checkbox on the "Upload File" page. Am I missing
something ?
>>>>>>
>>>>>> Thanks,
>>>>>> -Abhi
>>>>>>
>>>>>> On Fri, Oct 2, 2009 at 10:21 AM, Greg Von Kuster
<ghv2(a)psu.edu> wrote:
>>>>>>> Change set 2812 will be included in a release to the
distribution
>>>>>>> today
>>>>>>> -
>>>>>>> here are details of a new option that we're hoping will
provide what
>>>>>>> is
>>>>>>> needed for most labs.
>>>>>>>
>>>>>>> Add a new option, 'allow_library_path_paste' that
adds a new upload
>>>>>>> page
>>>>>>> ("Upload files from file system paths") to the
admin-side library
>>>>>>> upload
>>>>>>> pages.
>>>>>>> This form contains a textarea that allows Galaxy admins to
paste any
>>>>>>> number
>>>>>>> of
>>>>>>> file system paths (files or directories) from which Galaxy
will
>>>>>>> import
>>>>>>> library
>>>>>>> datasets, saving the directory structure (if desired).
>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆSince such
>>>>>>> ability
>>>>>>> allows admins access to any file on the Galaxy server which
is
>>>>>>> readable
>>>>>>> by
>>>>>>> Galaxy's system user, this option is disabled by default,
and system
>>>>>>> administrators should take care in assigning Galaxy
administrators
>>>>>>> when
>>>>>>> this
>>>>>>> feature is enabled. ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆControls on
what files are accessible
>>>>>>> to this
>>>>>>> tool
>>>>>>> based
>>>>>>> on ownership or other properties can be added at a later date
if
>>>>>>> there
>>>>>>> is
>>>>>>> sufficient interest for such features.
>>>>>>>
>>>>>>> This commit also includes a checkbox on the "Upload
directory of
>>>>>>> files"
>>>>>>> page
>>>>>>> (as well as the new "Upload files from file system
paths" page above)
>>>>>>> that
>>>>>>> will
>>>>>>> prevent Galaxy from copying data to its files directory (by
default,
>>>>>>> 'database/files/'). ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆThis
is useful for large library
>>>>>>> datasets that
>>>>>>> live
>>>>>>> in
>>>>>>> their own managed locations on the file system, this will
prevent the
>>>>>>> existence
>>>>>>> of duplicate copies of datasets (but means administrators
must take
>>>>>>> care
>>>>>>> to
>>>>>>> manage data - moving or removing the data from its
Galaxy-external
>>>>>>> location
>>>>>>> will render these datasets invalid within Galaxy).
>>>>>>>
>>>>>>> One unique feature to be aware of: when using the "Copy
data into
>>>>>>> Galaxy?"
>>>>>>> checkbox on the "Upload directory of files" page,
any symbolic links
>>>>>>> encountered in the chosen import directory will be made
absolute and
>>>>>>> dereferenced ONCE. ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆThis allows
administrators to link
>>>>>>> large
>>>>>>> datasets to
>>>>>>> the
>>>>>>> import directory, rather than having to make full copies,
while being
>>>>>>> able
>>>>>>> to
>>>>>>> delete such links after importing.
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆOnly the first symlink
>>>>>>> (the one
>>>>>>> in
>>>>>>> the
>>>>>>> import directory itself) is dereferenced; all others remain.
>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆSee
>>>>>>> the
>>>>>>> following
>>>>>>> for an example:
>>>>>>>
>>>>>>> library_import_dir = /galaxy/import
>>>>>>>
>>>>>>> % ls -lR /galaxy/import
>>>>>>> /galaxy/import:
>>>>>>> total 6
>>>>>>> drwxr-xr-x ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆ2 nate
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆnate
>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆ512
>>>>>>> Oct ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆ1 11:31 link/
>>>>>>>
>>>>>>> /galaxy/import/link:
>>>>>>> total 10
>>>>>>> lrwxrwxrwx ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆ1 nate
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆnate
>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆ71 Oct
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆ1 10:38 1.bed ->
>>>>>>> ../../../home/nate/galaxy/test-data/1.bed
>>>>>>> lrwxrwxrwx ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆ1 nate
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆnate
>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆ60 Oct
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆ1 10:38 2.bed ->
>>>>>>> /home/nate/galaxy/test-data/2.bed
>>>>>>> lrwxrwxrwx ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆ1 nate
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆnate
>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆ11 Oct
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆ1 10:38 3.bed ->
>>>>>>> ../../3.bed
>>>>>>> lrwxrwxrwx ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆ1 nate
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆnate
>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆ35 Oct
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆ1 11:30 4.bed ->
>>>>>>> ../../galaxy_symlink/test-data/4.bed
>>>>>>> lrwxrwxrwx ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆ1 nate
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆnate
>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆ41 Oct
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆ1 11:31 5.bed ->
>>>>>>> /galaxy/galaxy_symlink/test-data/5.bed
>>>>>>>
>>>>>>> % ls -l /galaxy/3.bed
>>>>>>> lrwxrwxrwx ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆ1 nate
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆnate
>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆ60 Oct
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆ1 10:39
>>>>>>> /galaxy/3.bed ->
>>>>>>> /home/nate/galaxy/test-data/3.bed
>>>>>>>
>>>>>>> % ls -l /galaxy/galaxy_symlink
>>>>>>> lrwxrwxrwx ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆ1 nate
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆnate
>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆ44 Oct
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆ1 11:30
>>>>>>> /galaxy/galaxy_symlink
>>>>>>> -> /home/nate/galaxy/
>>>>>>>
>>>>>>> In this example,
>>>>>>>
>>>>>>> 1.bed is a relative symbolic link to the real 1.bed.
>>>>>>>
>>>>>>> 2.bed is an absolute symlink to the real 2.bed.
>>>>>>>
>>>>>>> 3.bed is a relative symlink to ../../3.bed, aka
/galaxy/3.bed, which
>>>>>>> itself
>>>>>>> is
>>>>>>> a symlink to the real 3.bed.
>>>>>>>
>>>>>>> 4.bed is a relative symlink which follows another symlink
>>>>>>> (/galaxy/galaxy_symlink) to the real 4.bed.
>>>>>>>
>>>>>>> 5.bed is an absolute symlink in the same fashion as 4.bed
>>>>>>>
>>>>>>> If the 'link' server directory is chosen on the
"Upload directory of
>>>>>>> files"
>>>>>>> page, and "Copy data into Galaxy?" is checked
"No", the following
>>>>>>> files
>>>>>>> will
>>>>>>> be
>>>>>>> referenced by Galaxy:
>>>>>>>
>>>>>>> /home/nate/galaxy/test-data/1.bed
>>>>>>> /home/nate/galaxy/test-data/2.bed
>>>>>>> /galaxy/3.bed
>>>>>>> /galaxy/galaxy_symlink/test-data/4.bed
>>>>>>> /galaxy/galaxy_symlink/test-data/5.bed
>>>>>>>
>>>>>>> The Galaxy administrator may now safely delete
/galaxy/import/link,
>>>>>>> but
>>>>>>> should
>>>>>>> take care not to remove the referenced symbolic links
(/galaxy/3.bed,
>>>>>>> /galaxy/galaxy_symlink).
>>>>>>>
>>>>>>> Not all symbolic links are dereferenced because it is assumed
that if
>>>>>>> an
>>>>>>> administrator links to a path in the import directory which
itself is
>>>>>>> (or
>>>>>>> contains) links, that is the preferred path for accessing the
data.
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> Oliver Hofmann wrote:
>>>>>>>> Dear all,
>>>>>>>>
>>>>>>>>
>>>>>>>> to echo what Abhi said: we are also currently looking of
ways to
>>>>>>>> automatically import data sets (libraries) into Galaxy
without
>>>>>>>> having
>>>>>>>> to
>>>>>>>> manually trigger the import via the administration
interface, and
>>>>>>>> ideally
>>>>>>>> while keeping the data in the original place. The idea
here is to
>>>>>>>> have
>>>>>>>> multiple tools all point at the original 'source
data' without
>>>>>>>> having
>>>>>>>> to
>>>>>>>> replicate terabytes of data.
>>>>>>>>
>>>>>>>> Not quite sure how feasible this is in practice, but it
certainly
>>>>>>>> would
>>>>>>>> be
>>>>>>>> incredibly helpful.
>>>>>>>>
>>>>>>>> Best,
>>>>>>>>
>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆOliver
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> On 28 Sep 2009, at 14:24, Abhishek Pratap wrote:
>>>>>>>>
>>>>>>>>> HI Greg
>>>>>>>>>
>>>>>>>>> Thanks for a quick reply and making some requested
changes. However
>>>>>>>>> I
>>>>>>>>> am
>>>>>>>>> not still sure if importing NGS data will help in
long run.
>>>>>>>>>
>>>>>>>>> For Centers generating NGS data which could 2-3 T.B /
week
>>>>>>>>> depending
>>>>>>>>> on
>>>>>>>>> no. of sequencers I think importing another copy of
raw data into
>>>>>>>>> galaxy
>>>>>>>>> workspace will be asking for lot of disk space. I
understand it is
>>>>>>>>> a
>>>>>>>>> neat
>>>>>>>>> way of doing things as it becomes agnostic of the raw
data location
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆbut
>>>>>>>>> might not be the best way for handling huge data in
long run for
>>>>>>>>> centers
>>>>>>>>> like ours.
>>>>>>>>>
>>>>>>>>> Please correct me if I am wrong. I think we could
also have a
>>>>>>>>> simple
>>>>>>>>> option without having to import the data and just
using it for
>>>>>>>>> analysis
>>>>>>>>> from
>>>>>>>>> the current location, also storing results at the
same location.
>>>>>>>>> That
>>>>>>>>> way in
>>>>>>>>> future even if the data set is moved analysis also
stays with it.
>>>>>>>>>
>>>>>>>>> Let me know what you feel. I will be happy to know if
there are any
>>>>>>>>> other
>>>>>>>>> smart reasons of importing the data in galaxy
workspace just for
>>>>>>>>> curiosity
>>>>>>>>> sake.
>>>>>>>>>
>>>>>>>>> Thanks,
>>>>>>>>> -Abhi
>>>>>>>>>
>>>>>>>>> On Mon, Sep 28, 2009 at 9:28 AM, Greg Von Kuster
<ghv2(a)psu.edu>
>>>>>>>>> wrote:
>>>>>>>>> Hello Abhishek,
>>>>>>>>>
>>>>>>>>> The Galaxy distribution includes the enhancements to
which I
>>>>>>>>> previously
>>>>>>>>> referred for uploading history files.
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆUploading files
>>>>>>>>> to a
>>>>>>>>> history
>>>>>>>>> now
>>>>>>>>> creates a Galaxy job just like any other tool, and
can be run on a
>>>>>>>>> cluster
>>>>>>>>> node, allowing upload of very large files.
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆThe initial
>>>>>>>>> pass of
>>>>>>>>> this
>>>>>>>>> work is
>>>>>>>>> also completed for uploading to a Data Library, but
this
>>>>>>>>> enhancement
>>>>>>>>> is
>>>>>>>>> still in test, so it should soon be available in the
distribution.
>>>>>>>>>
>>>>>>>>> Do you want to avoid having to import at all (e.g.
allow Galaxy to
>>>>>>>>> refer
>>>>>>>>> to datasets that live in their original locations)?
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆThis is not
>>>>>>>>> currently
>>>>>>>>> possible, but if this is what you are looking for, we
can consider
>>>>>>>>> some
>>>>>>>>> additional options on the current upload form, or
possibly a new,
>>>>>>>>> separate
>>>>>>>>> form.
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> Greg Von Kuster
>>>>>>>>> Galaxy Development Team
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> Abhishek Pratap wrote:
>>>>>>>>> Hi Greg, Anton and all
>>>>>>>>>
>>>>>>>>> Just wondering if there has been any progress made on
this end. I
>>>>>>>>> am
>>>>>>>>> sorry I was not able to follow it up on Assaf's
suggestion due to
>>>>>>>>> other
>>>>>>>>> things at work.
>>>>>>>>>
>>>>>>>>> I did try the latest version of galaxy and looks like
the files are
>>>>>>>>> still
>>>>>>>>> transferred over HTTP before they could be used in
the galaxy
>>>>>>>>> workspace.
>>>>>>>>> Also I would again like to highlight that many labs
might want to
>>>>>>>>> use
>>>>>>>>> the
>>>>>>>>> local instance of galaxy and prefer to point to a
local path where
>>>>>>>>> the
>>>>>>>>> file
>>>>>>>>> is being stored. That way we will have both the
benefits of using a
>>>>>>>>> cool GUI
>>>>>>>>> and process data stored locally.
>>>>>>>>>
>>>>>>>>> Let me know if you guys need some feedback or have
more questions.
>>>>>>>>> I
>>>>>>>>> will
>>>>>>>>> be happy to discuss them.
>>>>>>>>>
>>>>>>>>> best,
>>>>>>>>> -Abhi
>>>>>>>>>
>>>>>>>>> On Tue, Jul 21, 2009 at 4:26 PM, Greg Von Kuster
<ghv2(a)psu.edu
>>>>>>>>> <mailto:ghv2@psu.edu>> wrote:
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆHello Abishek,
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆWe are currently in the
process of significantly
>>>>>>>>> enhancing the
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆcurrent Galaxy upload
utilities, and the new version
>>>>>>>>> should
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆeliminate the issue
you've raised about the time
>>>>>>>>> needed to
>>>>>>>>> upload
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆlarge files via HTTP (
not for making an initial copy
>>>>>>>>> of the
>>>>>>>>> file in
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆthe Galaxy environment
). However, it will probably
>>>>>>>>> not be
>>>>>>>>> ready for
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆrelease for a few more
weeks, so if you can take
>>>>>>>>> advantage of
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆAssaf's script in
the meantime, that's great.
>>>>>>>>> ¬¨¬®¬¨¬Æ¬¨¬®‚à ö√ú‚Äö√Ñ√∂‚à ö‚Ć‚à ö‚à Ç‚Äö√†√∂‚Äö√†¬¥I
can't
>>>>>>>>> guarantee
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆthat all Galaxy features
will function correctly if
>>>>>>>>> you do this
>>>>>>>>> though.
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆAssaf, have you found
that using your script breaks
>>>>>>>>> anything?
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆAlso, if you upload a
file to a library rather than a
>>>>>>>>> history,
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆmultiple users can
"import" the library dataset into
>>>>>>>>> their
>>>>>>>>> history
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆfor analysis, but there
is only 1 file on disk ( users
>>>>>>>>> are
>>>>>>>>> pointing
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆto it from their
histories ). ¬¨¬®¬¨¬Æ¬¨¬®‚à ö√ú‚Äö√Ñ√∂‚à ö‚Ć‚à ö‚à Ç‚Äö√†√∂‚Äö√†¬¥But
>>>>>>>>> uploading a file to
>>>>>>>>> a history
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆwill create a new copy
of the file each time it is
>>>>>>>>> uploaded.
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆGreg Von Kuster
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆGalaxy Development Team
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆAbhishek Pratap wrote:
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆHi All
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆ@Greg : Please find my
>>>>>>>>> comments below.
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆOn Tue, Jul 21, 2009 at
>>>>>>>>> 10:44 AM, Greg Von
>>>>>>>>> Kuster<ghv2(a)psu.edu
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆ<mailto:ghv2@psu.edu>>
>>>>>>>>> wrote:
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> Hello Abhi,
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> Can you clarify the steps you took that
>>>>>>>>> produced the
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> behavior?
‚Äö√Ñ√∂‚à ö‚Ć‚à ö‚à Ç‚Äö√†√∂¬¨‚à û‚Äö√Ñ√∂‚à ö‚Ć‚à ö√∫‚Äö√†√∂‚Äö√¢‚Ć‚Äö√Ñ√∂‚à ö‚Ć‚à ö‚à Ç‚Äö√†√∂‚Äö√†¬¥See
my
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> comments below.
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> Anton Nekrutenko wrote:
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆAbhishek:
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆLet talk. This is the area
>>>>>>>>> of active current
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆdevelopment. We are
>>>>>>>>>
‚Äö√Ñ√∂‚à ö‚Ć‚à ö‚à Ç‚Äö√†√∂¬¨‚à û‚Äö√Ñ√∂‚à ö‚Ć‚à ö√∫‚Äö√†√∂‚Äö√¢‚Ć‚Äö√Ñ√∂‚à ö‚Ć‚à ö‚à Ç‚Äö√†√∂‚Äö√†¬¥looking
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆat implementing a universal
>>>>>>>>> fastq-like format or
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆsupporting
>>>>>>>>>
‚Äö√Ñ√∂‚à ö‚Ć‚à ö‚à Ç‚Äö√†√∂¬¨‚à û‚Äö√Ñ√∂‚à ö‚Ć‚à ö√∫‚Äö√†√∂‚Äö√¢‚Ć‚Äö√Ñ√∂‚à ö‚Ć‚à ö‚à Ç‚Äö√†√∂‚Äö√†¬¥multiple
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆformats. Perhaps we should
>>>>>>>>> join efforts in ironing
>>>>>>>>> out
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>>
‚Äö√Ñ√∂‚à ö‚Ć‚à ö‚à Ç‚Äö√†√∂¬¨‚à û‚Äö√Ñ√∂‚à ö‚Ć‚à ö√∫‚Äö√†√∂‚Äö√¢‚Ć‚Äö√Ñ√∂‚à ö‚Ć‚à ö‚à Ç‚Äö√†√∂‚Äö√†¬¥specifications.
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆanton
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆgalaxy team
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆOn Jul 20, 2009, at 5:18
>>>>>>>>> PM, Abhishek Pratap
>>>>>>>>> wrote:
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆHi
All
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆI
recently came
>>>>>>>>> to know about NGS analysis
>>>>>>>>> on galaxy
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
during ISMB.
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
Getting excited
>>>>>>>>> I tried couple of things
>>>>>>>>> basically
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆto
play with
>>>>>>>>> it.
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆFew
comments :
>>>>>>>>> I may have interepretted
>>>>>>>>> something
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
described below
>>>>>>>>> in a
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
wrong way. My
>>>>>>>>> apologies before hand.
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆOn
a standalone
>>>>>>>>> installation of galaxy while
>>>>>>>>> I was
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
trying to
>>>>>>>>> explore
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
one
>>>>>>>>> FASTQ(sequence) file. It takes
>>>>>>>>> considerable (>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆ20
min) for a
>>>>>>>>> fastq
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
file to get
>>>>>>>>> uploaded (2 GB).
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> Are you using the Galaxy upload utility
>>>>>>>>> to create an
>>>>>>>>> item in
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> your history
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> that points to the dataset file on
>>>>>>>>> disk?
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆYes that is precisely
>>>>>>>>> correct, I am trying to
>>>>>>>>> upload a solexa
>>>>>>>>> FASTQ
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆfile but on a standalone
>>>>>>>>> galaxy installation from
>>>>>>>>> my local
>>>>>>>>> file
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆsystem.
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆI
>>>>>>>>> am not sure what is the rationale
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
behind that.
>>>>>>>>> Ideally I think there should be
>>>>>>>>> no need
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆto
upload such
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
heavy files
>>>>>>>>> into the workspace.
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆA
>>>>>>>>> data file that originates from a
>>>>>>>>> place external to
>>>>>>>>> Galaxy
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> must be uploaded
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> into Galaxy so that the disk file can
>>>>>>>>> be placed in the
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> location configured
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆin
>>>>>>>>> the Galaxy config file.
>>>>>>>>>
‚Äö√Ñ√∂‚à ö‚Ć‚à ö‚à Ç‚Äö√†√∂¬¨‚à û‚Äö√Ñ√∂‚à ö‚Ć‚à ö√∫‚Äö√†√∂‚Äö√¢‚Ć‚Äö√Ñ√∂‚à ö‚Ć‚à ö‚à Ç‚Äö√†√∂‚Äö√†¬¥Also,
when data is
>>>>>>>>> uploaded to
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> Galaxy ( either
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆto
>>>>>>>>> a history or a library ), several
>>>>>>>>> database table
>>>>>>>>> settings
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> are created
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> that are used by various Galaxy
>>>>>>>>> features.
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> They could actually be used straight
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆThanks for the clarification
>>>>>>>>> but I am not sure this
>>>>>>>>> will help
>>>>>>>>> a
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆlot of
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆpeople who are interested to
>>>>>>>>> install and run galaxy
>>>>>>>>> locally
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆmainly for
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆthe following reasons. May
>>>>>>>>> be it is just local to
>>>>>>>>> me.
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆA. We already one instance
>>>>>>>>> of data saved on the
>>>>>>>>> local file
>>>>>>>>> system
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆB. Making another copy via
>>>>>>>>> galaxy will eat away a
>>>>>>>>> lot of space
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆin long run.
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆC. The time needed to import
>>>>>>>>> the files into galaxy
>>>>>>>>> space is
>>>>>>>>> huge
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
away by the
>>>>>>>>> path specified.
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> What do you mean by "the path
>>>>>>>>> specified"?
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆWell what I mean was a way
>>>>>>>>> to specify the path of
>>>>>>>>> the file/run
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆon the
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆlcoal file system and galaxy
>>>>>>>>> could directly pick it
>>>>>>>>> up from
>>>>>>>>> there
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆrather than uploading it
>>>>>>>>> into its own space. Now I
>>>>>>>>> understand
>>>>>>>>> this
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆmight not work based on the
>>>>>>>>> way the system was
>>>>>>>>> designed.
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> Also is there any way to access the
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
scripts for
>>>>>>>>> analysis on the command line. I
>>>>>>>>> know
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
this undermines
>>>>>>>>> the
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
main aim of
>>>>>>>>> working with galaxy but rite now
>>>>>>>>> I am
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
concerned about
>>>>>>>>> the
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> performance/time.
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> You should be able to run any Galaxy
>>>>>>>>> tool from the
>>>>>>>>> command
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> line as long as
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> you have all of the tool's required
>>>>>>>>> binaries in your
>>>>>>>>> path.
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>>
‚Äö√Ñ√∂‚à ö‚Ć‚à ö‚à Ç‚Äö√†√∂¬¨‚à û‚Äö√Ñ√∂‚à ö‚Ć‚à ö√∫‚Äö√†√∂‚Äö√¢‚Ć‚Äö√Ñ√∂‚à ö‚Ć‚à ö‚à Ç‚Äö√†√∂‚Äö√†¬¥However,
running
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆa
>>>>>>>>> tool from within Galaxy should
>>>>>>>>> generally not be any
>>>>>>>>> slower
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> than running it
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> outside of Galaxy, depending, of
>>>>>>>>> course, on what you are
>>>>>>>>> doing.
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆOk I was under the
>>>>>>>>> impression that running from
>>>>>>>>> SHELL will
>>>>>>>>> eliminate
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆthe step of uploading them
>>>>>>>>> into galaxy file space.
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆ-Abhi
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆI
will be happy
>>>>>>>>> to discuss more about this
>>>>>>>>> in case
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆyou
have some
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> comments/questions for me.
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
Best,
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
-Abhi
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> -----------------------------
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
Abhishek Pratap
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
Bioinformatics
>>>>>>>>> Software Engineer
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
Institute for
>>>>>>>>> Genome Sciences
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
School of
>>>>>>>>> Medicine, Univ of Maryland
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
801, W.
>>>>>>>>> Baltimore Street, Baltimore, MD
>>>>>>>>> 21209
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
Ph:
>>>>>>>>> (+1)-410-706-2296
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>>
www.igs.umaryland.edu/
>>>>>>>>> <
http://www.igs.umaryland.edu/>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> _______________________________________________
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
galaxy-user
>>>>>>>>> mailing list
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> galaxy-user(a)bx.psu.edu
>>>>>>>>> <mailto:galaxy-user@bx.psu.edu>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
http://mail.bx.psu.edu/cgi-bin/mailman/listinfo/galaxy-user
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆAnton Nekrutenko
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
http://nekrut.bx.psu.edu
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
http://galaxyproject.org
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> _______________________________________________
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆgalaxy-user mailing list
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆgalaxy-user(a)bx.psu.edu
>>>>>>>>> <mailto:galaxy-user@bx.psu.edu>
>>>>>>>>>
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>>>
http://mail.bx.psu.edu/cgi-bin/mailman/listinfo/galaxy-user
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> _______________________________________________
>>>>>>>>> galaxy-user mailing list
>>>>>>>>> galaxy-user(a)bx.psu.edu
>>>>>>>>>
http://mail.bx.psu.edu/cgi-bin/mailman/listinfo/galaxy-user
>>>>>>>> --
>>>>>>>> Research Associate ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆDepartment of
>>>>>>>> Biostatistics
>>>>>>>> Associate Director ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆBioinformatics Core
>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
>>>>>>>> ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆHarvard School of Public
Health
>>>>>>>> Skype: ohofmann ¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√Ñ‚Äâ€
¬¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тƬ¨¬®¬¨¬Æ‚Äö√Ñ√∂‚à ö√ë‚Äö√тĆPhone: +1
>>>>>>>> (617) 365 0984
>>>>>>>>
>>>>>>>>
>>>>>>>>
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