Just realised I'd not sent this to the list. Whoops! This is still broken, anyone have any ideas? Cheers, Chris -------- Original Message -------- Subject: Re: [galaxy-user] Fresh install has wrong layout Date: Tue, 21 Jul 2009 10:47:50 +0100 From: Chris Cole <chris@compbio.dundee.ac.uk> Organisation: University of Dundee To: Nate Coraor <nate@bx.psu.edu> References: <4A4E147C.6010107@compbio.dundee.ac.uk> <4A4E1506.5030609@bx.psu.edu> <4A4E1716.2070800@compbio.dundee.ac.uk> <4A52AFFA.5020102@bx.psu.edu> Hi Nate, Sorry for not replying earlier, I've been on holiday. Attached should be my universe_wsgi.ini for the updated server. (The file has a .txt extension to avoid sending blockage). I've used the same settings (where applicable) for my currently working svn version 1686. Chris Nate Coraor wrote:

Chris,

Could you send us your universe_wsgi.ini? We haven't seen this happen without a proxy before.

--nate

Chris Cole wrote:

...

Hi Nate,

Nope. There's no proxy configured. The only things I changed in the HTTP config part of the universe_wsgi.ini are the host and the port. Cheers,

Chris

Nate Coraor wrote:

...

Hi Chris,

It sounds like you maybe be running through a proxy, away from the server root, without the proxy-prefix option set in universe_wsgi.ini? If so, have a look at the documentation here:

http://g2.trac.bx.psu.edu/wiki/HowToInstall/ApacheProxy#Apacheconfigurationw...

--nate

Chris Cole wrote:

...

Hi,

I've been using the subversion version of Galaxy for a while, but now I want to update to the latest mercurial release.

I installed it in a new location as per the wiki and set-up the SGE settings as per my previous install and all the tests pass. It launches fine, but when viewing the website the frames seem to be off-by-one. i.e., the 'Tools' frame is empty except for "This link may not be followed from within Galaxy.", the tools are in the middle window and the 'History' frame has general information.

I can't see any errors in the paster.log file, so where can I look to sort out this error? Thanks,

Chris _______________________________________________ galaxy-user mailing list galaxy-user@bx.psu.edu http://mail.bx.psu.edu/cgi-bin/mailman/listinfo/galaxy-user

-- Dr Chris Cole Senior Bioinformatics Research Officer School of Life Sciences Research University of Dundee Dow Street Dundee DD1 5EH Scotland, UK url: http://network.nature.com/profile/drchriscole e-mail: chris@compbio.dundee.ac.uk Tel: +44 (0)1382 388 721 The University of Dundee is a registered Scottish charity, No: SC015096 -- Dr Chris Cole Senior Bioinformatics Research Officer School of Life Sciences Research University of Dundee Dow Street Dundee DD1 5EH Scotland, UK url: http://network.nature.com/profile/drchriscole e-mail: chris@compbio.dundee.ac.uk Tel: +44 (0)1382 388 721 The University of Dundee is a registered Scottish charity, No: SC015096