Hello! I am adding support for Galaxy's asynchronous data sources to a server of mine, but I cannot get Galaxy to retrieve the actual data from it. So far, I have added a data source tool to my Galaxy installation which links out to my server. There I track the URL that is provided by Galaxy and later I use this URL to tell Galaxy that the data can be retrieved. At this point, Galaxy returns an HTML document to me, which says (excerpt): "[...] <p>The following job has been successfully added to the queue:</p> <div style="padding: 10px"><b> 1: testserver</b></div> <p> You can check the status of queued jobs and view the resulting data by refreshing the <b>History</b> pane. When the job has been run the status will change from 'running' to 'finished' if completed successfully or 'error' if problems were encountered. </p> [...]" I just discard this HTML. When I then go back to my Galaxy server, nothing has happened. Even when I refresh, I do not see any job pending. Does anyone know why Galaxy would not retrieve the data? Do I really have to show the HTML that is returned by Galaxy to make it work? Thanks, Joachim
Hello, again, On 2011-11-13, at 10:47 AM, Joachim Baran wrote:
Does anyone know why Galaxy would not retrieve the data? Do I really have to show the HTML that is returned by Galaxy to make it work? To follow up on my own email: it seems that the data is retrieved. I see that files with the right contents are created in galaxy-dist/database/files/000
So, what could be the reason that they do not show up in the web interface? Thanks, Joachim
Hi Joachim, Can you try changeset 6267:7a72e5299fdc and see if that works for you? Thanks for using Galaxy, Dan On Nov 13, 2011, at 12:07 PM, Joachim Baran wrote:
Hello, again,
On 2011-11-13, at 10:47 AM, Joachim Baran wrote:
Does anyone know why Galaxy would not retrieve the data? Do I really have to show the HTML that is returned by Galaxy to make it work? To follow up on my own email: it seems that the data is retrieved. I see that files with the right contents are created in galaxy-dist/database/files/000
So, what could be the reason that they do not show up in the web interface?
Thanks, Joachim ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
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Hi Dan! On 14 November 2011 11:42, Daniel Blankenberg <dan@bx.psu.edu> wrote:
Can you try changeset 6267:7a72e5299fdc and see if that works for you?
Actually, I just got it to work now. It turns out that I really have to open the URL that Galaxy provides on the client side (i.e., in the browser). Thanks for looking into this though! Best Wishes, Joachim
participants (2)
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Daniel Blankenberg -
Joachim Baran