moving to galaxy-dev.... this is probably related to this issue: http://dev.list.galaxyproject.org/problems-with-labels-in-the-tool-box-and-o... Hence, try deleting "integrated_tool_panel.xml" first before you do a restart. Regards, Hans On 09/06/2012 01:29 PM, Makis Ladoukakis wrote:

Dear Galaxy users,

Has anyone experienced this problem before? In my local instance of Galaxy on a server I've deleted the path of almost all sections with their corresponding tools from tool_conf.xml (wanting to leave my own customized section) but after a restart and a new run of the run.sh there are still two of them (SNP/WGA: Data; Filters andPhenotype Association) left in the tool list with their first tool also appearing. Is there a special setting for those two? Can anyone help me?

Thank you, Efthymios Ladoukakis

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