Hello Sachit, For now, these are in the Galaxy Distribution at http://bitbucket.org/galaxy/galaxy-dist. Look under: tools / ngs_rna / tophat2* tools / sr_mapping / bowtie2* I believe that they will be migrated to the Galaxy Main Tool Shed sometime soon: http://toolshed.g2.bx.psu.edu/ Thanks! Jen Galaxy team On 10/18/12 9:49 PM, Sachit Adhikari wrote:

Hello Everyone, Can someone please give me the link to download .py file and the wrapper(.xml) of Bowtie2 and Tophat2? Thanks

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