Hello Takako,

The best way to load data locally is to use the the method described here: https://bitbucket.org/galaxy/galaxy-central/wiki/DataLibraries/UploadingFile...

Please let us know if we can help more,

Best,

Jen Galaxy team

On 1/18/11 4:18 PM, Nan Deng wrote:

Hi,

I installed Galaxy locally, and just start to use it, and I want to use it to align my short reads with fastq format using Tophat. The first thing I need to do is uploading my data file. If the data is small then that's no problem, but my data is about 5G, so when I upload, it took very long time (it is still uploading). Is it normal? and could you let me know how long it will take? I think since both Galaxy and my data are on my local machine, it should be very easy to let Galaxy know where the data is rather than uploading for such a long time.

Thanks

Nan

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galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user

Hi Farhat,

This is reasonable suggestion, I'll pass this along to the development team for consideration.

Thanks for using Galaxy!

Jen Galaxy team

On 1/19/11 10:50 AM, Farhat Habib wrote:

Would it be possible to configure Galaxy to simply refuse to upload files greater than 2 GB since almost no browsers seem to support it? A large number of people seem to run into this issue.

-Farhat

On Wed, Jan 19, 2011 at 9:02 PM, Jennifer Jackson <jen@bx.psu.edu mailto:jen@bx.psu.edu> wrote:

Hello Takako,

The best way to load data locally is to use the the method described
here:
https://bitbucket.org/galaxy/galaxy-central/wiki/DataLibraries/UploadingFiles

Please let us know if we can help more,

Best,

Jen
Galaxy team

On 1/18/11 4:18 PM, Nan Deng wrote:

    Hi,

    I installed Galaxy locally, and just start to use it, and I want
    to use
    it to align my short reads with fastq format using Tophat. The first
    thing I need to do is uploading my data file. If the data is
    small then
    that's no problem, but my data is about 5G, so when I upload, it
    took
    very long time (it is still uploading). Is it normal? and could
    you let
    me know how long it will take? I think since both Galaxy and my
    data are
    on my local machine, it should be very easy to let Galaxy know
    where the
    data is rather than uploading for such a long time.

    Thanks

    Nan



    _______________________________________________
    galaxy-user mailing list
    galaxy-user@lists.bx.psu.edu <mailto:galaxy-user@lists.bx.psu.edu>
    http://lists.bx.psu.edu/listinfo/galaxy-user


--
Jennifer Jackson
http://usegalaxy.org
_______________________________________________
galaxy-user mailing list
galaxy-user@lists.bx.psu.edu <mailto:galaxy-user@lists.bx.psu.edu>
http://lists.bx.psu.edu/listinfo/galaxy-user

Hi Pi,

Your ideas are great, too. The dev team appreciates all input and this will be passed along, too. Thanks for the feedback!

Best,

Jen Galaxy team

On 1/20/11 1:41 AM, Pieter Neerincx wrote:

Hi Jen,

If you do that, please make it an option in universe_wsgi.ini. It's fine if uploads of> 2GB will be disabled by default, but please allow me to enable it if it's working for me...

Cheers,

Pi

On Jan 19, 2011, at 8:12 PM, Jennifer Jackson wrote:

...

Hi Farhat,

This is reasonable suggestion, I'll pass this along to the development team for consideration.

Thanks for using Galaxy!

Jen Galaxy team

On 1/19/11 10:50 AM, Farhat Habib wrote:

...

Would it be possible to configure Galaxy to simply refuse to upload files greater than 2 GB since almost no browsers seem to support it? A large number of people seem to run into this issue.

-Farhat

On Wed, Jan 19, 2011 at 9:02 PM, Jennifer Jackson<jen@bx.psu.edu mailto:jen@bx.psu.edu> wrote:

Hello Takako,

The best way to load data locally is to use the the method described
here:
https://bitbucket.org/galaxy/galaxy-central/wiki/DataLibraries/UploadingFiles

Please let us know if we can help more,

Best,

Jen
Galaxy team

On 1/18/11 4:18 PM, Nan Deng wrote:

    Hi,

    I installed Galaxy locally, and just start to use it, and I want
    to use
    it to align my short reads with fastq format using Tophat. The first
    thing I need to do is uploading my data file. If the data is
    small then
    that's no problem, but my data is about 5G, so when I upload, it
    took
    very long time (it is still uploading). Is it normal? and could
    you let
    me know how long it will take? I think since both Galaxy and my
    data are
    on my local machine, it should be very easy to let Galaxy know
    where the
    data is rather than uploading for such a long time.

    Thanks

    Nan



    _______________________________________________
    galaxy-user mailing list
    galaxy-user@lists.bx.psu.edu<mailto:galaxy-user@lists.bx.psu.edu>
    http://lists.bx.psu.edu/listinfo/galaxy-user


--
Jennifer Jackson
http://usegalaxy.org
_______________________________________________
galaxy-user mailing list
galaxy-user@lists.bx.psu.edu<mailto:galaxy-user@lists.bx.psu.edu>
http://lists.bx.psu.edu/listinfo/galaxy-user

-- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org _______________________________________________ galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user

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mobile: +31 6 143 66 783 e-mail: pieter.neerincx@gmail.com skype: pieter.online

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