Hi Roberta, We are in the process of adding more genomes indexed for this tool and I can make sure that the latest Arabidopsis builds are there. But you don't need to wait, you can use a custom reference genome with the tool right now (this genome should be small enough). Here is how: http://wiki.galaxyproject.org/Support#Custom_reference_genome Best, Jen Galaxy team On 11/8/13 2:58 AM, Roberta Galletti wrote:

Is there any chance to have the Arabidopsis genome put in the sliding menu of the Tophat2 (version 0.6)?

Thank you

//

/Roberta Galletti/

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