The command line script is available in the Galaxy distribution under
On the Galaxy website there is a facility in the 'Fetch Alignments'
to 'Stitch MAF blocks given a set of genomic intervals'. I have all the
Galaxy scripts also set up and would like to do the above with a command
line python script but I cant find any in the
folder that relate to stitching maf blocks together. At the moment all I
use is maf_extract_ranges_indexed.py but this doesn't stitch the blocks.
this python script available and if so which script is it?
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