Pieter Neerincx wrote:

Hi,

I recently installed a new version of Galaxy on a server and now I have the problem that Galaxy keeps complaining some eggs are out of date. However this does not seem to be correct as I already have those eggs. Galaxy will try to fetch them and fails with "Removed conflicting egg...." This happens whenever I start Galaxy and even when the daemon process is not running and I simply check the status. See below for an example. Does anyone on the list know what is causing this and how I can prevent this?

Hi Pieter, Sorry for the late reply. If this is still occuring, we may need to add a little debugging output to figure out why Galaxy thinks these eggs are not correct. --nate

Cheers,

Pi

[root@app-prod-vh02 ~]# /nbic/prog/galaxy/run.sh --status Some eggs are out of date, attempting to fetch... Fetched http://eggs.g2.bx.psu.edu/new/Tempita/Tempita-0.1-py2.4.egg Removed conflicting egg: /nbic/prog/galaxy/eggs/Tempita-0.1-py2.4.egg Fetched http://eggs.g2.bx.psu.edu/new/lrucache/lrucache-0.2-py2.4.egg Removed conflicting egg: /nbic/prog/galaxy/eggs/lrucache-0.2-py2.4.egg Fetched http://eggs.g2.bx.psu.edu/new/NoseHTML/NoseHTML-0.3.1-py2.4.egg Removed conflicting egg: /nbic/prog/galaxy/eggs/NoseHTML-0.3.1-py2.4.egg Fetched http://eggs.g2.bx.psu.edu/new/Beaker/Beaker-1.4-py2.4.egg Removed conflicting egg: /nbic/prog/galaxy/eggs/Beaker-1.4-py2.4.egg Fetched http://eggs.g2.bx.psu.edu/new/WebError/WebError-0.8a-py2.4.egg Removed conflicting egg: /nbic/prog/galaxy/eggs/WebError-0.8a-py2.4.egg Fetched http://eggs.g2.bx.psu.edu/new/twill/twill-0.9-py2.4.egg Removed conflicting egg: /nbic/prog/galaxy/eggs/twill-0.9-py2.4.egg Fetched http://eggs.g2.bx.psu.edu/new/decorator/decorator-3.1.2-py2.4.egg Removed conflicting egg: /nbic/prog/galaxy/eggs/decorator-3.1.2-py2.4.egg Fetched http://eggs.g2.bx.psu.edu/new/wsgiref/wsgiref-0.1.2-py2.4.egg Removed conflicting egg: /nbic/prog/galaxy/eggs/wsgiref-0.1.2-py2.4.egg Fetched http://eggs.g2.bx.psu.edu/new/nose/nose-0.11.1-py2.4.egg Removed conflicting egg: /nbic/prog/galaxy/eggs/nose-0.11.1-py2.4.egg Fetch successful. No PID file paster.pid

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