Hello Asifullah, Click on the "save" icon for the dataset to initiate a download. This icon is shaped like a little purple disk on the very left side of the dataset's box in the right history pane. Hopefully this is helpful, Thank you, Jen Galaxy team On 12/15/10 7:47 AM, vasu punj wrote:

Hi, Can we save Bam file from Tophat out put if so how can we do that please. Thanks.

--- On *Wed, 12/15/10, Jennifer Jackson /<jen@bx.psu.edu>/* wrote:

From: Jennifer Jackson <jen@bx.psu.edu> Subject: Re: [galaxy-user] Fwd: Need a generous help regarding uploading To: "asifullah khan" <asifullah111@gmail.com> Cc: galaxy-user@bx.psu.edu Date: Wednesday, December 15, 2010, 9:38 AM

Hello Asifullah,

The Galaxy tool "Get Data -> Upload File" has instructions for uploading data to the FTP server. We recommend using the 3rd party utility FileZilla as a desktop FTP client.

http://file-zilla.com/

Hopefully this will get you started,

Best!

Jen Galaxy team

ps: In the future, if you could send questions directly to galaxy-user@bx.psu.edu <http://us.mc1147.mail.yahoo.com/mc/compose?to=galaxy-user@bx.psu.edu>, it would be very helpful for us.

On 12/12/10 8:32 AM, Kelly Vincent wrote: > > > Begin forwarded message: > >> *From: *asifullah khan <asifullah111@gmail.com <http://us.mc1147.mail.yahoo.com/mc/compose?to=asifullah111@gmail.com> >> <mailto:asifullah111@gmail.com <http://us.mc1147.mail.yahoo.com/mc/compose?to=asifullah111@gmail.com>>> >> *Date: *December 12, 2010 11:01:27 AM EST >> *To: *galaxy-user-owner@lists.bx.psu.edu <http://us.mc1147.mail.yahoo.com/mc/compose?to=galaxy-user-owner@lists.bx.psu.edu> >> <mailto:galaxy-user-owner@lists.bx.psu.edu <http://us.mc1147.mail.yahoo.com/mc/compose?to=galaxy-user-owner@lists.bx.psu.edu>> >> *Subject: **Need a generous help regarding uploading* >> >> Dear All, >> >> I am in trouble to upload 1.2Gb illumine data on Galaxy page for >> subsequent assembling and analysis steps. I am basically a biologist >> and new regarding utility of modern bioinformatics tools. some one >> have suggested to upload first your data on a http web page then it >> would be easy to be uploaded on GALaxy. But it is also not possible >> for me as having little computer knowledge. So could some one help me >> generously regarding these issue. I will highly appreciate his/her help. >> >> Regards >> Asifullah Khan > > > > _______________________________________________ > galaxy-user mailing list > galaxy-user@lists.bx.psu.edu <http://us.mc1147.mail.yahoo.com/mc/compose?to=galaxy-user@lists.bx.psu.edu> > http://lists.bx.psu.edu/listinfo/galaxy-user

-- Jennifer Jackson http://usegalaxy.org <http://usegalaxy.org/> _______________________________________________ galaxy-user mailing list galaxy-user@lists.bx.psu.edu <http://us.mc1147.mail.yahoo.com/mc/compose?to=galaxy-user@lists.bx.psu.edu> http://lists.bx.psu.edu/listinfo/galaxy-user

-- Jennifer Jackson http://usegalaxy.org