Hi Cory, A list of Galaxy dependancies can be found on the wiki at: http://wiki.galaxyproject.org/Admin/Tools/Tool%20Dependencies ...although many tools allow a range of tool versions. You can also identify the information about the specific tool versions by clicking on the View Details Œi¹ icon of a history item created by that tool and looking at the Tool Version field. If you¹re using the Galaxy public server (https://usegalaxy.org/) then clicking on the Œi¹ icon of a cuffdiff output file will show: Tool Version:cuffdiff v2.1.1 (4046M) Hope this helps. Cheers, Graham Dr. Graham Etherington Bioinformatics Support Officer, The Sainsbury Laboratory, Norwich Research Park, Norwich NR4 7UH. UK Tel: +44 (0)1603 450601 On 04/11/2013 20:57, "Cory Dunn" <cdunn@ku.edu.tr> wrote:

Dear Galaxy Staff:

I was wondering which version of Cuffdiff is currently running on Galaxy. The wrapper version is 0.0.6, but I did not see the actual version of the underlying software under the "Tool Version" field (please see attached screen grab).

Thanks for your help, Cory Dunn