Is there any way to calculate % AT or GC of a group of sequences?
13 Jan
2010
13 Jan
'10
10:43 a.m.
I am looking at a file of peaks from ChIP-chip data and would like to know whether there is a way to take all the sequeneces associated with these peaks and to calculate the total %AT and %GC, to see if there is enrichment compared with the entire genome? Thanks Noa
13 Jan
13 Jan
11 a.m.
New subject: Is there any way to calculate % AT or GC of a group of sequences?
Intersect your data track with the gc5Base track to see GC percent in the regions of interest. --Hiram Noa Sher wrote:
I am looking at a file of peaks from ChIP-chip data and would like to know whether there is a way to take all the sequeneces associated with these peaks and to calculate the total %AT and %GC, to see if there is enrichment compared with the entire genome? Thanks Noa
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Hiram Clawson -
Noa Sher