Hello, I've just installed Galaxy in my server in order to run it locally but there's a couple of tasks I haven't been able to complete, I hope somebody could advice me on how to accomplish them: I wanted to be able to have direct access to the contents stored in my server, so when click on 'Get Data'; 'Upload File' I can get the files stored in my server instead of the files stored in my personal computer. Is this even possible? If not, what other options do I have if I want to load heavy packages (~3 GB) without having to wait much? I haven't been able to 'Edit' Workflows like in the public server, I have been able to create them, but once I try to edit them it just attempts to load the 'Workflow Editor' but it never does. How can I solve this? Do I have to configure something before attempting to do this? Thanks in advance, David ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
David, I can answer your first question, but will leave it to others to answer your second as I am less likely to answer it correctly. Regarding uploading files from your server, use the "Upload files (to data libraries) from file system paths but do not copy into Galaxy's default file store". For details about the various upload options to Galaxy data libraries, see http://wiki.g2.bx.psu.edu/Admin/Data%20Libraries/Uploading%20Library%20Files. For complete details about Galaxy data libraries, see http://wiki.g2.bx.psu.edu/Admin/Data%20Libraries/Libraries. Greg On Feb 10, 2012, at 3:28 AM, David Castillo wrote:
Hello, I've just installed Galaxy in my server in order to run it locally but there's a couple of tasks I haven't been able to complete, I hope somebody could advice me on how to accomplish them:
I wanted to be able to have direct access to the contents stored in my server, so when click on 'Get Data'; 'Upload File' I can get the files stored in my server instead of the files stored in my personal computer. Is this even possible? If not, what other options do I have if I want to load heavy packages (~3 GB) without having to wait much?
I haven't been able to 'Edit' Workflows like in the public server, I have been able to create them, but once I try to edit them it just attempts to load the 'Workflow Editor' but it never does. How can I solve this? Do I have to configure something before attempting to do this?
Thanks in advance, David
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
On Feb 10, 2012, at 3:28 AM, David Castillo wrote:
• I haven't been able to 'Edit' Workflows like in the public server, I have been able to create them, but once I try to edit them it just attempts to load the 'Workflow Editor' but it never does. How can I solve this? Do I have to configure something before attempting to do this?
This should work out of the box without any extra configuration. Do you see any errors(failure to load a resource, javascript errors, etc) when you attempt to load the editor? My hunch is that galaxy.workflow_editor.canvas.js isn't being found, perhaps due to a proxy configuration being not quite right. Is this galaxy instance set up behind apache or nginx? -Dannon
participants (3)
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Dannon Baker -
David Castillo -
Greg Von Kuster