Hello Musa, I am forwarding this question to the mailing list so that someone better qualified can help you. -K On Mon, Feb 21, 2011 at 12:18 PM, Musa A. Hassan <mhassan@mit.edu> wrote:
I am trying to use galaxy for the first time and am running into some early problems. While trying to upload my file which is basically a fq containing illumina short reads, the file won't upload. When I try the fastq extension of the same file, it does but then the file isn't recognized by the groomer hence it's like I have no file uploaded. Do you know how I can circumvent this problem.
Musa Hassan, PhD Wellcome Trust-MIT Fellow Massachusetts Institute of Technology Department of Biology, 68 77 Massachusetts Avenue, Cambridge, MA 02139 USA
Hello Musa, After upload, click on the pencil icon for your dateset and set the metadata so that the file type in the "Change data type" box is "fastq". This will get around any file extension issues. Please let us know if we can help more. As Kanwei stated, data questions are best sent directly to the galaxy-user mailing list. Hopefully this helps! Jen Galaxy team On 2/21/11 12:09 PM, Kanwei Li wrote:
Hello Musa,
I am forwarding this question to the mailing list so that someone better qualified can help you.
-K
On Mon, Feb 21, 2011 at 12:18 PM, Musa A. Hassan <mhassan@mit.edu <mailto:mhassan@mit.edu>> wrote:
I am trying to use galaxy for the first time and am running into some early problems. While trying to upload my file which is basically a fq containing illumina short reads, the file won't upload. When I try the fastq extension of the same file, it does but then the file isn't recognized by the groomer hence it's like I have no file uploaded. Do you know how I can circumvent this problem.
Musa Hassan, PhD Wellcome Trust-MIT Fellow Massachusetts Institute of Technology Department of Biology, 68 77 Massachusetts Avenue, Cambridge, MA 02139 USA
_______________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
-- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org
participants (2)
-
Jennifer Jackson -
Kanwei Li