On 7/16/12 4:11 PM, Irene Bassano wrote:
just few questions about cuffdiff if anyone can answer:
1.how can I load more than two sam/bam files?Galaxy gives spaceonly for two files
Change the tool form for the option "Perform replicate analysis:" to be
"Yes" (the default is "No"). Use two conditions (Groups).
2.what to use as input: cufflinks, cuffcompare or cuffmerge?
GTF output from any of these may be appropriate.
Please see the tutorial on Galaxy main at:
And the "Common uses" protocols on the Cufflinks web site plus their new
paper (also linked at this site, from side bar, as "Protocol"):
Thanks a lot!
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