Hi Peera, This error was caused by a network problem on our cluster, that has been resolved. Please let us know if you have any further problems running this tool. Sorry for the inconvenience, and thanks for using Galaxy, Best, Jen Galaxy team On 3/9/12 9:29 AM, Hemarajata, Peera wrote:

Dear all,

I was trying to use Bowtie on the public server to align my groomed paired reads to a reference FASTA file. My FASTA contains sequences of 7 contigs (so 7 sequences altogether). After a while this error showed up:

Job output not returned by PBS: the output datasets were deleted while the job was running, the job was manually dequeued or there was a cluster error.

I re-checked the format of the FASTA file and it looked ok. No illegal character. Would anybody be able to suggest what I can do to fix this?

Thank you!

Peera Hemarajata, M.D.

Advanced graduate student - Versalovic lab Department of Molecular Virology and Microbiology - Baylor College of Medicine Department of Pathology - Texas Children's Hospital Suite 830, 8th Floor Feigin Center. Tel: 832-824-8245

___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:

http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists, please use the interface at:

http://lists.bx.psu.edu/

-- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/wiki/Support