Job of format conversion waiting for over 5 days
Hello, Please I would like to know if it would be normal of a job to be queued for several days? It is a SAM to BAM conversion, and it has been waiting for over 5 days to run. I understand that the SAM file is pretty large but other similar conversions I made on the server recently were done within few minutes. Thanks! -- Eduardo G. P. Fox http://eduardofox.blogspot.com.br/ http://www.mendeley.com/profiles/eduardo-fox/
2014-03-31 11:29 GMT+02:00 Eduardo Fox <ofoxofox@gmail.com>:
Hello,
Please I would like to know if it would be normal of a job to be queued for several days? It is a SAM to BAM conversion, and it has been waiting for over 5 days to run. I understand that the SAM file is pretty large but other similar conversions I made on the server recently were done within few minutes.
Thanks!
-- Eduardo G. P. Fox
http://eduardofox.blogspot.com.br/ http://www.mendeley.com/profiles/eduardo-fox/
-- Eduardo G. P. Fox http://eduardofox.blogspot.com.br/ http://www.mendeley.com/profiles/eduardo-fox/
Hi Eduardo, I believe the job in question is not running because one of its inputs (#101) failed to have metadata set properly. This situation can be fixed by using the 'auto-detect' button on the failed dataset. --nate On Mon, Mar 31, 2014 at 5:20 PM, Eduardo Fox <ofoxofox@gmail.com> wrote:
2014-03-31 11:29 GMT+02:00 Eduardo Fox <ofoxofox@gmail.com>:
Hello,
Please I would like to know if it would be normal of a job to be queued for several days? It is a SAM to BAM conversion, and it has been waiting for over 5 days to run. I understand that the SAM file is pretty large but other similar conversions I made on the server recently were done within few minutes.
Thanks!
-- Eduardo G. P. Fox
http://eduardofox.blogspot.com.br/ http://www.mendeley.com/profiles/eduardo-fox/
-- Eduardo G. P. Fox
http://eduardofox.blogspot.com.br/ http://www.mendeley.com/profiles/eduardo-fox/ ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
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participants (2)
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Eduardo Fox
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Nate Coraor