Online Hackathon - March 11-15, 2024 - Improving the annotation of Galaxy resources for microbial data analysis and beyond
Hi all,
We organize an Online Hackathon in March to improve the annotation of Galaxy resources for microbial data analysis and beyond: https://galaxyproject.org/events/2024-03-11-hackathon-galaxy-resources-annot...
Objectives
The objective of this hackathon is to improve the annotation of the Galaxy resources (tools, training, workflows) for microbial data analysis by:
• Linking microbial Galaxy tools https://galaxyproject.github.io/galaxy_tool_metadata_extractor/microgalaxy/ to bio.tools http://bio.tools/ to obtain EDAM ontology annotation https://edamontology.org/page • Improving bio.tools annotations • Annotating existing microbial-related tutorials https://training.galaxyproject.org/training-material/search2?query=microgalaxy with EDAM terms • Reflecting on the addition of EDAM terms to workflows • Reflecting on missing terms in the EDAM ontology for microbial data analyses • Brainstorming about a way to connect tool annotations to improve training and workflow annotations
All this work will be beneficial to structure the tools, workflows, and training we have to display them on the microGalaxy landing page https://microgalaxy.usegalaxy.eu/, structure the Galaxy tool panel, and create figures and tables for the technical paper https://docs.google.com/document/d/1uVQ8E_8HpIuHDYHwR82jU8pCvj0tnebFKyS0juAoyGc/edit we are working on.
General information
• Date: March 11th - 15th 2024 (full week) • Location: Online with a • a Zoom room, open the whole week • 2 daily stand-ups to accommodate different time zones • Several brainstorming meetings • microGalaxy Matrix chat https://matrix.to/#/%23galaxyproject_microGalaxy:gitter.im for communication • Time: full day, 9/10am CET to open end • Cost: Free
Preliminary Schedule
The schedule is quite flexible. There is no requirement to join the whole week.
See the event page for more details about the planned schedule (stand-ups, brainstorming meetings): https://galaxyproject.org/events/2024-03-11-hackathon-galaxy-resources-annot....
Participation
To participate, add your name, your affiliation, your availability during the week, and your email in the "Participation" section of the organizational GDoc so we can include you in further communication: https://docs.google.com/document/d/1B125dSKhB6AevnyShSi_zXIXUQd49tvNYfWHuyqm...
We hope to see a lot of you even if it is just to say hi :)
Best,
Paul and Bérénice
Hi all,
As a reminder, we will have next week an Online Hackathon to improve metadata annotation of Galaxy tools and training. Details below
Anyone is more than welcome to join even just to say Hi!
Best,
Bérénice and Paul
On Feb 19, 2024, at 10:12, Bérénice Batut berenice.batut@gmail.com wrote:
Hi all,
We organize an Online Hackathon in March to improve the annotation of Galaxy resources for microbial data analysis and beyond: https://galaxyproject.org/events/2024-03-11-hackathon-galaxy-resources-annot...
Objectives
The objective of this hackathon is to improve the annotation of the Galaxy resources (tools, training, workflows) for microbial data analysis by:
• Linking microbial Galaxy tools <https://galaxyproject.github.io/galaxy_tool_metadata_extractor/microgalaxy/> to bio.tools <http://bio.tools/> to obtain EDAM ontology annotation <https://edamontology.org/page> • Improving bio.tools annotations • Annotating existing microbial-related tutorials <https://training.galaxyproject.org/training-material/search2?query=microgalaxy> with EDAM terms • Reflecting on the addition of EDAM terms to workflows • Reflecting on missing terms in the EDAM ontology for microbial data analyses • Brainstorming about a way to connect tool annotations to improve training and workflow annotationsAll this work will be beneficial to structure the tools, workflows, and training we have to display them on the microGalaxy landing page https://microgalaxy.usegalaxy.eu/, structure the Galaxy tool panel, and create figures and tables for the technical paper https://docs.google.com/document/d/1uVQ8E_8HpIuHDYHwR82jU8pCvj0tnebFKyS0juAoyGc/edit we are working on.
General information
• Date: March 11th - 15th 2024 (full week) • Location: Online with a • a Zoom room, open the whole week • 2 daily stand-ups to accommodate different time zones • Several brainstorming meetings • microGalaxy Matrix chat <https://matrix.to/#/%23galaxyproject_microGalaxy:gitter.im> for communication • Time: full day, 9/10am CET to open end • Cost: FreePreliminary Schedule
The schedule is quite flexible. There is no requirement to join the whole week.
See the event page for more details about the planned schedule (stand-ups, brainstorming meetings): https://galaxyproject.org/events/2024-03-11-hackathon-galaxy-resources-annot....
Participation
To participate, add your name, your affiliation, your availability during the week, and your email in the "Participation" section of the organizational GDoc so we can include you in further communication: https://docs.google.com/document/d/1B125dSKhB6AevnyShSi_zXIXUQd49tvNYfWHuyqm...
We hope to see a lot of you even if it is just to say hi :)
Best,
Paul and Bérénice
Dear all, this is a friendly reminder, that our first Meeting for the Hackathon - Annotation of Galaxy resources for microbial data analysis starts in 40 minutes (9:30 CET); we are looking forward to seeing many of you during the week!
On Mon, 19 Feb 2024 at 10:12, Bérénice Batut berenice.batut@gmail.com wrote:
Hi all,
We organize an *Online Hackathon* in *March* to improve the *annotation of Galaxy resources* for microbial data analysis and beyond:
https://galaxyproject.org/events/2024-03-11-hackathon-galaxy-resources-annot...
*Objectives*
The objective of this hackathon is to improve the annotation of the Galaxy resources (tools, training, workflows) for microbial data analysis by:
• Linking microbial Galaxy tools https://galaxyproject.github.io/galaxy_tool_metadata_extractor/microgalaxy/ to bio.tools http://bio.tools to obtain EDAM ontology annotation https://edamontology.org/page • Improving bio.tools annotations • Annotating existing microbial-related tutorials https://training.galaxyproject.org/training-material/search2?query=microgalaxy with EDAM terms • Reflecting on the addition of EDAM terms to workflows • Reflecting on missing terms in the EDAM ontology for microbial data analyses • Brainstorming about a way to connect tool annotations to improve training and workflow annotations
All this work will be beneficial to structure the tools, workflows, and training we have to display them on the microGalaxy landing page https://microgalaxy.usegalaxy.eu/, structure the Galaxy tool panel, and create figures and tables for the technical paper https://docs.google.com/document/d/1uVQ8E_8HpIuHDYHwR82jU8pCvj0tnebFKyS0juAoyGc/edit we are working on.
*General information*
• *Date*: March 11th - 15th 2024 (full week) • *Location*: Online with a • a Zoom room, open the whole week • 2 daily stand-ups to accommodate different time zones • Several brainstorming meetings • microGalaxy Matrix chat https://matrix.to/#/%23galaxyproject_microGalaxy:gitter.im for communication • *Time*: full day, 9/10am CET to open end • *Cost*: Free
*Preliminary Schedule*
The schedule is quite flexible. There is no requirement to join the whole week.
See the event page for more details about the planned schedule (stand-ups, brainstorming meetings): https://galaxyproject.org/events/2024-03-11-hackathon-galaxy-resources-annot... .
*Participation*
To participate, add your name, your affiliation, your availability during the week, and your email in the "Participation" section of the organizational GDoc so we can include you in further communication: https://docs.google.com/document/d/1B125dSKhB6AevnyShSi_zXIXUQd49tvNYfWHuyqm...
We hope to see a lot of you even if it is just to say hi :)
Best,
Paul and Bérénice
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Bérénice Batut -
Paul Zierep