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single-cell-cop@lists.galaxyproject.org

April 2025

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📝Notes from April meeting
by Pavankumar Videm 09 Apr '25

09 Apr '25

** *Hello Galaxy 🖖🏾SPOC!* * Single-cell & sPatial Omics Community of practice We had our ‘project updates’ meeting on 8th April, so a big thank you to the people sharing their achievements in the last months! 🎉 We are setting up the stage for the upcoming Galaxy Training Academy. 🖖🏾SPOC is adding two additional tutorials to the single-cell track. Thanks to Marisa for recording the Seurat PBMC3k Clustering tutorial and Diana for updating and recording the Pseudobulk DE analysis tutorial. 🎉 We now have a new group called “WORKFLOWS” on our 🖖🏾SPOC clickup board to track single-cell workflows on IWC <https://github.com/galaxyproject/iwc/tree/main/workflows/scRNAseq>. Check the 📝Meeting Notes doc <https://docs.google.com/document/d/19W--oeFoEgfZbw9MWvky_A__554th-VG3ryOqtf…>for full details from our last meeting! Actions ✅Update our Click-Up Site <https://app.clickup.com/9015477668/v/b/5-90152810734-2>! with what you’re working on, even if you can’t/didn’t make the meetings ✅ Check the previous SPOC CoFest setup <https://docs.google.com/document/d/1GRAY_uE3dtyaGlKR7rqCXgjrJQUkgch-eyc7Asi…>and tasks <https://docs.google.com/spreadsheets/d/17BsRGk_PwYdcSlhhfr4BgpDkS4cyZg8-qhv…>and let us know if you would volunteer to chair the next one after the GTA. ** *⭐️Sign up for the Galaxy Training Academy here: https://forms.gle/hDA7rfHALLkb4LNC8 <https://forms.gle/hDA7rfHALLkb4LNC8>* ** Next meeting 👋🏾Tuesday 6th of May <https://arewemeetingyet.com/London/2025-05-06/08:00/SPOC-ster> 🗓️SPOC Google Calendar <https://calendar.google.com/calendar/embed?src=galaxy.sc.cop%40gmail.com&ct…> 🗓️SPOC Outlook Calendar (Embed) <https://calendar.google.com/calendar/ical/galaxy.sc.cop%40gmail.com/public/…> * *Cheers! * * * -- Dr. Pavankumar Videm (he/him) Chair for Bioinformatics Department of Computer Science University of Freiburg Georges-Koehler-Allee 079 D-79110 Freiburg, Germany Tel: (+49) 761 203 54132 Email:videmp@informatik.uni-freiburg.de European Galaxy Team https://galaxyproject.org/eu/ https://usegalaxy.eu

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⌚️Meeting this week!
by Wendi.Bacon [She/Her] 07 Apr '25

07 Apr '25

Hello 🖖🏾SPOC! Single-cell & sPatial Omics Community of practice We are meeting this week! Actions! ✅Please update our Click-Up Site<https://app.clickup.com/9015477668/v/b/5-90152810734-2> with what you’ve been up to in the Galaxy single cell world, whether you can attend the meeting or not! ⭐Check out/add to our meeting agenda<https://docs.google.com/document/d/19W--oeFoEgfZbw9MWvky_A__554th-VG3ryOqtf…> Next meeting 👋🏾Tuesday 8th of April<https://arewemeetingyet.com/London/2025-04-08/13:00/SPOC-ster> 🗓️SPOC Google Calendar<https://calendar.google.com/calendar/embed?src=galaxy.sc.cop%40gmail.com&ct…> 🗓️SPOC Outlook Calendar (Embed)<https://calendar.google.com/calendar/ical/galaxy.sc.cop%40gmail.com/public/…> 📝Meeting Notes doc<https://docs.google.com/document/d/19W--oeFoEgfZbw9MWvky_A__554th-VG3ryOqtf…> Join Zoom Meeting https://us02web.zoom.us/j/87443808126?pwd=QjZ3TEJmSVBpdHgrQUQwOGkraFM2UT09 Meeting ID: 874 4380 8126 Passcode: nerdsunite I’m sadly away on leave, so this may be my last email to you all as Pavan is now 🖖🏾SPOC chair! May you have an awesome meeting! Wendi [cid:image001.png@01DB945D.857E5500] [signature_134045891] [cidimage002.png(a)01D7311B.5DCF6570] Wendi Bacon (she/her) Senior Lecturer in Health Sciences<https://www.open.ac.uk/people/wb2845> School of Life, Health & Chemical Sciences | Faculty of STEM The Open University | Milton Keynes MK7 6AA | United Kingdom 🎓Explore the Galaxy single-cell training materials!<https://training.galaxyproject.org/training-material/topics/single-cell/> Galaxy Contributor<https://training.galaxyproject.org/training-material/hall-of-fame/nomadscie…> | Single-cell & sPatial Omics Community Chair<https://galaxyproject.org/community/sig/singlecell/> Community Board Chair<https://galaxyproject.org/community/governance/gcb/> | Executive Board<https://galaxyproject.org/community/governance/geb/> I sometimes work flexibly so if you have received an email from me outside of normal business hours, I’m sending it at a time that suits me. Please do not feel you have to read or reply until normal working hours.

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