- SPOC - lists.galaxyproject.org

📝Notes from December meeting
by Wendi.Bacon [She/Her] 18 Dec '24

18 Dec '24

Hello Galaxy 🖖🏾SPOC! Single-cell & sPatial Omics Community of practice What a fantastic year it has been for us! Our annual space-themed year-in-review post is in a PR, we’ve had numerous events, we have a fancy new community contributions page on the way<https://github.com/galaxyproject/training-material/pull/5653>, and enthusiasm across ELIXIR groups and globally thanks to our CoFest and commitment to sustainability, teamwork, and making things usable. Most of all, we have genuine smiles and laughter in our meetings, which makes SPOC a nice (virtual) place to work. Fantastic job team! Check the 📝Meeting Notes doc<https://docs.google.com/document/d/19W--oeFoEgfZbw9MWvky_A__554th-VG3ryOqtf…> for full details! News 🎉CoFest results post!<https://training.galaxyproject.org/training-material/news/2024/12/06/spoc_c…> We should do it again! 📣WB has done a general click-up/notes tidy-up/communications clean-up 📣How to join SPOC instructions<https://docs.google.com/document/d/19W--oeFoEgfZbw9MWvky_A__554th-VG3ryOqtf…> tab for easy dissemination for new members Actions ⭐️Add when you joined SPOC here<https://docs.google.com/document/d/19W--oeFoEgfZbw9MWvky_A__554th-VG3ryOqtf…>, and other missing metadata ⭐️Check (and later, share!) our annual blog post: PR is here<https://github.com/galaxyproject/training-material/pull/5655> and the final post will (eventually) be found here: https://training.galaxyproject.org/training-material/news/<https://training.galaxyproject.org/training-material/news/2024/12/17/gta-fe…>2024-12-18-spoc.html<https://training.galaxyproject.org/training-material/news/2024/12/17/gta-fe…> ⭐️Up-vote (or action) this issue around data integration between hub & GTN: https://github.com/galaxyproject/galaxy-hub/issues/2809 ⭐️Think of any other ELIXIR All-Hands workshop ideas you might want help with, due mid-Jan ⭐️Add ideas/thoughts to this idea<https://docs.google.com/document/d/17jowIApvgNZ0nzXIf9ihW2xmdwpI3Zj3/edit?u…> on collectively building a single-cell learning community ⭐️Check single cell site and raise issues / ideas on its view / function on the galaxy-labs-engine repo: https://github.com/usegalaxy-au/galaxy-labs-engine. If anyone is interested in substantially contributing to that repo, please message there! I bet Cam would be delighted to have help! ⭐️Rollover from previous meeting: How do we automate that any single-cell tools in the toolshed get into (all) of our single-cell subdomains? Installed, and also placed in a reasonable subcategory? Pavan to start looking at this, but is going to require global teamwork. ClickUp card created<https://app.clickup.com/t/86c1cfv8j> ⭐️Write-a-thon writers - write! Want a full draft for January! 🔺Feedback for Galaxy Governance: Save Helena! WB posted to GCB on 18-December. To follow up after next GCB meeting and report back. ✅Update our Click-Up Site<https://app.clickup.com/9015477668/v/b/5-90152810734-2>! with what you’re working on, even if you can’t/didn’t make the meetings ✅Answer any unanswered queries on our Galaxy single-cell help forum<https://help.galaxyproject.org/tag/single-cell/l/latest> ✅Run an event? Give a presentation? Do literally anything with our community? Make sure to write a blog post! There’s a googleform widget to make this super fast!<https://training.galaxyproject.org/training-material/news/2024/01/29/simpli…> Tag it single-cell! ⭐Have an EXCELLENT break, get some much-needed rest, and we’ll see you in February for our next meeting! To discuss next time Planning the next CoFest? Metadata for tracking community contributions (presentations & publications tagging) Next meeting 👋🏾https://arewemeetingyet.com/London/2025-02-04/08:00/SPOCentines 🗓️SPOC Google Calendar<https://calendar.google.com/calendar/embed?src=galaxy.sc.cop%40gmail.com&ct…> 🗓️SPOC Outlook Calendar (Embed)<https://calendar.google.com/calendar/ical/galaxy.sc.cop%40gmail.com/public/…> Cheers! [cid:image001.png@01DB518A.F98FA900] [signature_1320041312] [cidimage002.png(a)01D7311B.5DCF6570] Wendi Bacon (she/her) Senior Lecturer in Health Sciences<https://www.open.ac.uk/people/wb2845> School of Life, Health & Chemical Sciences | Faculty of STEM The Open University | Milton Keynes MK7 6AA | United Kingdom 🎓Explore the Galaxy single-cell training materials!<https://training.galaxyproject.org/training-material/topics/single-cell/> Galaxy Contributor<https://training.galaxyproject.org/training-material/hall-of-fame/nomadscie…> | Single-cell & sPatial Omics Community Chair<https://galaxyproject.org/community/sig/singlecell/> Community Board Chair<https://galaxyproject.org/community/governance/gcb/> | Executive Board<https://galaxyproject.org/community/governance/geb/> I sometimes work flexibly so if you have received an email from me outside of normal business hours, I’m sending it at a time that suits me. Please do not feel you have to read or reply until normal working hours.

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⌚️Meeting today!
by Wendi.Bacon [She/Her] 05 Dec '24

05 Dec '24

Hello 🖖🏾SPOC! Single-cell & sPatial Omics Community of practice We are meeting today! Actions! ✅Please update our Click-Up<https://app.clickup.com/9015477668/v/li/901504482819> with what you’ve been up to in the Galaxy single cell world, whether you can attend the meeting or not! ⭐Check out/add to our meeting agenda<https://docs.google.com/document/d/19W--oeFoEgfZbw9MWvky_A__554th-VG3ryOqtf…> Also a reminder: ⭐Continue doing ace work for the Galaxy single & spatial community! Next meeting 👋🏾https://arewemeetingyet.com/London/2024-12-05/17:00/SPOCmas 🗓️SPOC Google Calendar<https://calendar.google.com/calendar/embed?src=galaxy.sc.cop%40gmail.com&ct…> 🗓️SPOC Outlook Calendar (Embed)<https://calendar.google.com/calendar/ical/galaxy.sc.cop%40gmail.com/public/…> 📝Meeting Notes doc<https://docs.google.com/document/d/19W--oeFoEgfZbw9MWvky_A__554th-VG3ryOqtf…> Join Zoom Meeting https://us02web.zoom.us/j/87443808126?pwd=QjZ3TEJmSVBpdHgrQUQwOGkraFM2UT09 Meeting ID: 874 4380 8126 Passcode: nerdsunite See you then! Wendi -- [cidimage001.png(a)01D7311B.5DCF6570] [cidimage002.png(a)01D7311B.5DCF6570] Wendi Bacon (she/her) Senior Lecturer in Health Sciences<https://www.open.ac.uk/people/wb2845> School of Life, Health & Chemical Sciences | Faculty of STEM The Open University | Milton Keynes MK7 6AA | United Kingdom Galaxy Single-Cell & Spatial Omics<https://galaxyproject.org/community/sig/singlecell/> I sometimes work flexibly so if you have received an email from me outside of normal business hours, I’m sending it at a time that suits me. Please do not feel you have to read or reply until normal working hours.

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Single-cell & sPatial Omics Galaxy Community CoFest
by Wendi.Bacon [She/Her] 12 Nov '24

12 Nov '24

Hello! Can you please share to your wider networks of single-cell scientists the following event? Both Galaxy and non-Galaxy researchers very welcome! 🖖🏾SPOC CoFest Event - Dec 6🖖🏾 The Galaxy Single-cell and sPatial Omics Community of Practice (SPOC) are hosting their first Collaboration Fest, welcoming new and experienced contributors to our training materials. Who should attend? * Single-cell bioinformaticians who do not use Galaxy * New Galaxy single-cell users * Experienced Galaxy contributors * Experienced Galaxy SPOC contributors Many hands make small work, and together, we can continue offering free, comprehensive single-cell training to scientists across the globe! Join us for a day-long event (live on Zoom, although you’re very welcome to join asynchronously) to improve Galaxy single-cell training resources! Tasks range from editing typos or improving explanations, to testing a tutorial or adding automated workflow testing. To join Register at our Event page<https://training.galaxyproject.org/training-material/events/2024-12-06-spoc…>, where you can also find our event doc<https://docs.google.com/document/d/1GRAY_uE3dtyaGlKR7rqCXgjrJQUkgch-eyc7Asi…> with more details, a link to add it to your calendar, and information on what (brief) training you may need to do beforehand. “First and foremost Galaxy CoFests are about growing the community of future contributors.” Cheers! Wendi -- [cidimage001.png(a)01D7311B.5DCF6570] [cidimage002.png(a)01D7311B.5DCF6570] Wendi Bacon (she/her) Senior Lecturer in Health Sciences<https://www.open.ac.uk/people/wb2845> School of Life, Health & Chemical Sciences | Faculty of STEM The Open University | Milton Keynes MK7 6AA | United Kingdom Galaxy Single-Cell & Spatial Omics<https://galaxyproject.org/community/sig/singlecell/> Better Martial Arts<https://better-martial-arts.org/> I sometimes work flexibly so if you have received an email from me outside of normal business hours, I’m sending it at a time that suits me. Please do not feel you have to read or reply until normal working hours.

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⌚️Meeting this week!
by Wendi.Bacon [She/Her] 11 Nov '24

11 Nov '24

Hello 🖖🏾SPOC! Single-cell & sPatial Omics Community of practice We are meeting this week! Actions! ✅Please update our Click-Up<https://app.clickup.com/9015477668/v/li/901504482819> with what you’ve been up to in the Galaxy single cell world, whether you can attend the meeting or not! ⭐Check out/add to our meeting agenda<https://docs.google.com/document/d/19W--oeFoEgfZbw9MWvky_A__554th-VG3ryOqtf…> Also a reminder: ⭐Continue doing ace work for the Galaxy single & spatial community! Next meeting 👋🏾https://arewemeetingyet.com/London/2024-11-12/08:00/SPOCvember 🗓️SPOC Google Calendar<https://calendar.google.com/calendar/embed?src=galaxy.sc.cop%40gmail.com&ct…> 🗓️SPOC Outlook Calendar (Embed)<https://calendar.google.com/calendar/ical/galaxy.sc.cop%40gmail.com/public/…> 📝Meeting Notes doc<https://docs.google.com/document/d/19W--oeFoEgfZbw9MWvky_A__554th-VG3ryOqtf…> Join Zoom Meeting https://us02web.zoom.us/j/87443808126?pwd=QjZ3TEJmSVBpdHgrQUQwOGkraFM2UT09 Meeting ID: 874 4380 8126 Passcode: nerdsunite See you then! Wendi -- [cidimage001.png(a)01D7311B.5DCF6570] [cidimage002.png(a)01D7311B.5DCF6570] Wendi Bacon (she/her) Senior Lecturer in Health Sciences<https://www.open.ac.uk/people/wb2845> School of Life, Health & Chemical Sciences | Faculty of STEM The Open University | Milton Keynes MK7 6AA | United Kingdom Galaxy Single-Cell & Spatial Omics<https://galaxyproject.org/community/sig/singlecell/> Better Martial Arts<https://better-martial-arts.org/> I sometimes work flexibly so if you have received an email from me outside of normal business hours, I’m sending it at a time that suits me. Please do not feel you have to read or reply until normal working hours.

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⌚️Meeting this week!
by Wendi.Bacon [She/Her] 30 Sep '24

30 Sep '24

Hello 🖖🏾SPOC! Single-cell & sPatial Omics Community of practice We are meeting this week! Actions! ✅Please update our Click-Up<https://app.clickup.com/9015477668/v/li/901504482819> with what you’ve been up to in the Galaxy single cell world, whether you can attend the meeting or not! ⭐Check out/add to our meeting agenda<https://docs.google.com/document/d/19W--oeFoEgfZbw9MWvky_A__554th-VG3ryOqtf…> Also a reminder: ⭐Continue doing ace work for the Galaxy single & spatial community! Next meeting 👋🏾https://arewemeetingyet.com/London/2024-10-01/13:00/SPOCtober 🗓️SPOC Google Calendar<https://calendar.google.com/calendar/embed?src=galaxy.sc.cop%40gmail.com&ct…> 🗓️SPOC Outlook Calendar (Embed)<https://calendar.google.com/calendar/ical/galaxy.sc.cop%40gmail.com/public/…> 📝Meeting Notes doc<https://docs.google.com/document/d/19W--oeFoEgfZbw9MWvky_A__554th-VG3ryOqtf…> Join Zoom Meeting https://us02web.zoom.us/j/87443808126?pwd=QjZ3TEJmSVBpdHgrQUQwOGkraFM2UT09 Meeting ID: 874 4380 8126 Passcode: nerdsunite See you then! Wendi -- [cidimage001.png(a)01D7311B.5DCF6570] [cidimage002.png(a)01D7311B.5DCF6570] Wendi Bacon (she/her) Senior Lecturer in Health Sciences<https://www.open.ac.uk/people/wb2845> School of Life, Health & Chemical Sciences | Faculty of STEM The Open University | Milton Keynes MK7 6AA | United Kingdom Galaxy Single-Cell & Spatial Omics<https://galaxyproject.org/community/sig/singlecell/> Better Martial Arts<https://better-martial-arts.org/> I sometimes work flexibly so if you have received an email from me outside of normal business hours, I’m sending it at a time that suits me. Please do not feel you have to read or reply until normal working hours.

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🥛 Mid-point Reminder
by Wendi.Bacon [She/Her] 18 Sep '24

18 Sep '24

Hello 🖖🏾SPOC! Single-cell & sPatial Omics Community of practice This is your mid-meeting reminder, occurring halfway between meetings! Help 🆘Monocle3 Batch Request tool<https://app.clickup.com/t/86byeze3p> - can someone please wrap this? It’s the last thing needed to make this toolsuite usable 🆘DropletUtils bug<https://app.clickup.com/t/86c087z08> - can someone please fix this? Actions ⭐️Add feedback on our latest subdomain relaunch here<https://docs.google.com/document/d/1-WvYUJ3ui2-df_Pj7e1kICbd3jfmpUMlmkXRuDA…> (Subdomain link included) ⭐️Join the new SPOC chat room<https://matrix.to/#/#spoc3:matrix.org> if you haven’t already! ⭐️Fill our this (super short) survey on how often you deliver training: https://forms.gle/XDALeT5sxWDS8X756 ⭐️Please help with scRNA-seq for the Galaxy Training Academy (Pavan leading this) https://docs.google.com/spreadsheets/d/19yNebTTMhrMDl6863QT1puOgtNasQKIvSXW… ⭐️By Sept 18th: Request what we want from the Galaxy ecosystem on this page<https://docs.google.com/spreadsheets/d/1Oo78Inlg89y-j5vNCBjGVWKFf9sXt1EP-mA…> as part of a Roadmap exercise ✅Update our Click-Up<https://app.clickup.com/9015477668/v/li/901504482819> with what you’re working on, even if you can’t/didn’t make the meetings ✅Answer any unanswered queries on our Galaxy single-cell help forum<https://help.galaxyproject.org/tag/single-cell/l/latest> ⭐Continue doing ace work for the Galaxy single & spatial community! Notice For Tool Developers 💫Put new tools into tool panel here (https://github.com/galaxyproject/galaxy_codex/tree/main/subdomains/singlece…) so they end up on all servers doing ‘single-cell’ 💫Make sure you add ‘Single Cell’ and ‘Spatial Omics’ to new tools as your tool metadata as we’re going to use this for automation purposes later Next meeting 👋🏾https://arewemeetingyet.com/London/2024-10-01/13:00/SPOCtober 🗓️SPOC Google Calendar<https://calendar.google.com/calendar/embed?src=galaxy.sc.cop%40gmail.com&ct…> 🗓️SPOC Outlook Calendar (Embed)<https://calendar.google.com/calendar/ical/galaxy.sc.cop%40gmail.com/public/…> 📝Meeting Notes doc<https://docs.google.com/document/d/19W--oeFoEgfZbw9MWvky_A__554th-VG3ryOqtf…> See you then! Wendi -- [cidimage001.png(a)01D7311B.5DCF6570] [cidimage002.png(a)01D7311B.5DCF6570] Wendi Bacon (she/her) Senior Lecturer in Health Sciences<https://www.open.ac.uk/people/wb2845> School of Life, Health & Chemical Sciences | Faculty of STEM The Open University | Milton Keynes MK7 6AA | United Kingdom Galaxy Single-Cell & Spatial Omics<https://galaxyproject.org/community/sig/singlecell/> Better Martial Arts<https://better-martial-arts.org/> I sometimes work flexibly so if you have received an email from me outside of normal business hours, I’m sending it at a time that suits me. Please do not feel you have to read or reply until normal working hours.

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📝Notes from September meeting
by Wendi.Bacon [She/Her] 06 Sep '24

06 Sep '24

Hello Galaxy 🖖🏾SPOC! Single-cell & sPatial Omics Community of practice Check the 📝Meeting Notes doc<https://docs.google.com/document/d/19W--oeFoEgfZbw9MWvky_A__554th-VG3ryOqtf…> for full details! We had quite the meeting! Help 🆘Monocle3 Batch Request tool<https://app.clickup.com/t/86byeze3p> - can someone please wrap this? It’s the last thing needed to make this toolsuite usable 🆘DropletUtils bug<https://app.clickup.com/t/86c087z08> - can someone please fix this? Actions ⭐️Add feedback on our latest subdomain relaunch here<https://docs.google.com/document/d/1-WvYUJ3ui2-df_Pj7e1kICbd3jfmpUMlmkXRuDA…> (Subdomain link included) ⭐️Join the new SPOC chat room<https://matrix.to/#/#spoc3:matrix.org> if you haven’t already! ⭐️Fill our this (super short) survey on how often you deliver training: https://forms.gle/XDALeT5sxWDS8X756 ⭐️Please help with scRNA-seq for the Galaxy Training Academy (Pavan leading this) https://docs.google.com/spreadsheets/d/19yNebTTMhrMDl6863QT1puOgtNasQKIvSXW… ⭐️By Sept 18th: Request what we want from the Galaxy ecosystem on this page<https://docs.google.com/spreadsheets/d/1Oo78Inlg89y-j5vNCBjGVWKFf9sXt1EP-mA…> as part of a Roadmap exercise ✅Update our Click-Up<https://app.clickup.com/9015477668/v/li/901504482819> with what you’re working on, even if you can’t/didn’t make the meetings ✅Answer any unanswered queries on our Galaxy single-cell help forum<https://help.galaxyproject.org/tag/single-cell/l/latest> ⭐Continue doing ace work for the Galaxy single & spatial community! Notice For Tool Developers 💫Put new tools into tool panel here (https://github.com/galaxyproject/galaxy_codex/tree/main/subdomains/singlece…) so they end up on all servers doing ‘single-cell’ 💫Make sure you add ‘Single Cell’ and ‘Spatial Omics’ to new tools as your tool metadata as we’re going to use this for automation purposes later Next meeting 👋🏾https://arewemeetingyet.com/London/2024-10-01/13:00/SPOCtober 🗓️SPOC Google Calendar<https://calendar.google.com/calendar/embed?src=galaxy.sc.cop%40gmail.com&ct…> 🗓️SPOC Outlook Calendar (Embed)<https://calendar.google.com/calendar/ical/galaxy.sc.cop%40gmail.com/public/…> Cheers! -- [cidimage001.png(a)01D7311B.5DCF6570] [cidimage002.png(a)01D7311B.5DCF6570] Wendi Bacon (she/her) Senior Lecturer in Health Sciences<https://www.open.ac.uk/people/wb2845> School of Life, Health & Chemical Sciences | Faculty of STEM The Open University | Milton Keynes MK7 6AA | United Kingdom Galaxy Single-Cell & Spatial Omics<https://galaxyproject.org/community/sig/singlecell/> Better Martial Arts<https://better-martial-arts.org/> I sometimes work flexibly so if you have received an email from me outside of normal business hours, I’m sending it at a time that suits me. Please do not feel you have to read or reply until normal working hours.

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⌚️Meeting this week!
by Wendi.Bacon [She/Her] 02 Sep '24

02 Sep '24

Hello 🖖🏾SPOC! Single-cell & sPatial Omics Community of practice We are meeting this week! Actions! ✅Please update our Click-Up<https://app.clickup.com/9015477668/v/li/901504482819> with what you’ve been up to in the Galaxy single cell world, whether you can attend the meeting or not! ⭐Check out/add to our meeting agenda<https://docs.google.com/document/d/19W--oeFoEgfZbw9MWvky_A__554th-VG3ryOqtf…> ⭐Continue doing ace work for the Galaxy single & spatial omics community! Next meeting 👋🏾Thursday, September 5 @ 17:00PM-London<https://arewemeetingyet.com/London/2024-09-05/17:00/SPOC> Check the 🗓️SPOC GoogleCalendar<https://calendar.google.com/calendar/embed?src=galaxy.sc.cop%40gmail.com&ct…> or integrate the 🗓️SPOC Outlook Calendar (Embed)<https://calendar.google.com/calendar/ical/galaxy.sc.cop%40gmail.com/public/…> Join Zoom Meeting https://us02web.zoom.us/j/87443808126?pwd=QjZ3TEJmSVBpdHgrQUQwOGkraFM2UT09 Meeting ID: 874 4380 8126 Passcode: nerdsunite 📝Meeting Notes doc<https://docs.google.com/document/d/19W--oeFoEgfZbw9MWvky_A__554th-VG3ryOqtf…> Hope to see you then! -- [cidimage001.png(a)01D7311B.5DCF6570] [cidimage002.png(a)01D7311B.5DCF6570] Wendi Bacon (she/her) Senior Lecturer in Health Sciences<https://www.open.ac.uk/people/wb2845> School of Life, Health & Chemical Sciences | Faculty of STEM The Open University | Milton Keynes MK7 6AA | United Kingdom Galaxy Single-Cell & Spatial Omics<https://galaxyproject.org/community/sig/singlecell/> Better Martial Arts<https://better-martial-arts.org/> I sometimes work flexibly so if you have received an email from me outside of normal business hours, I’m sending it at a time that suits me. Please do not feel you have to read or reply until normal working hours.

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