Follow-up 19 Sept SSA meeting
Hi all, Thank you (to Lucille I think) for the [ https://docs.google.com/document/d/1KTz4qxZBG4Z3sF23dVKPWXYz1mCNo2YDygSUHqtA... | detailed note-taking ] for the last meeting. I was able to catch up & had a few short comments/questions Conda : * Thanks for the information, I informed my team * I've not used conda in Galaxy, so my suggestions might be off, but * maybe make sure that a user cannot somehow override the conda-forge channel (through tool XML or other). * Maybe even consider IP/URL blocking any official conda links? NFS Object Store * I use NFS mounting on my Galaxy instance too (for an Object Source, and for Data Libraries) * Once the NFS folder/partition is mounted, it can be used as a regular folder? (transparent for Galaxy) * So I'm wondering why the need for the plugin in Galaxy? * Does your use-case mandate an Object Store and not a File Source? * I see a [ https://github.com/galaxyproject/galaxy/blob/9524be3b7ac0a0656aedd7596fb87ab... | sshfs File Source ] already exists and that [ https://blog.ja-ke.tech/2019/08/27/nas-performance-sshfs-nfs-smb.html | sshfs is becoming competitive with NFS ] Interactive Tools * Very cool, thanks! * We have some Jupyter Notebook users locally (not (yet) in Galaxy), this could be useful to them. Scratch Object Stores, & per-user Object Stores : * If I'm not mistaken, these are both features mentioned in the recent GCC? * Do you know when the videos/slides will be available for this GCC? ( I just checked [ https://www.youtube.com/@GalaxyProject/videos | https://www.youtube.com/@GalaxyProject/videos ] ) Thank you, Vlad
Hi Vlad to make sure nothing gets lost/unanswered, I suggest to put all your questions/ideas as topic suggestions for the next meeting: https://docs.google.com/document/d/1KTz4qxZBG4Z3sF23dVKPWXYz1mCNo2YDygSUHqtA... Regards, Hans-Rudolf On 24.09.2024 13:05, VLAD VISAN wrote:
Hi all,
Thank you (to Lucille I think) for the detailed note-taking <https://docs.google.com/document/d/1KTz4qxZBG4Z3sF23dVKPWXYz1mCNo2YDygSUHqtACQ8> for the last meeting. I was able to catch up & had a few short comments/questions
*Conda:*
* Thanks for the information, I informed my team * I've not used conda in Galaxy, so my suggestions might be off, but o maybe make sure that a user cannot somehow override the conda-forge channel (through tool XML or other). o Maybe even consider IP/URL blocking any official conda links?
*NFS Object Store*
* I use NFS mounting on my Galaxy instance too (for an Object Source, and for Data Libraries) * Once the NFS folder/partition is mounted, it can be used as a regular folder? (transparent for Galaxy) o So I'm wondering why the need for the plugin in Galaxy? * Does your use-case mandate an Object Store and not a File Source? o I see a sshfs File Source <https://github.com/galaxyproject/galaxy/blob/9524be3b7ac0a0656aedd7596fb87ab86653954a/lib/galaxy/files/sources/ssh.py> already exists and that sshfs is becoming competitive with NFS <https://blog.ja-ke.tech/2019/08/27/nas-performance-sshfs-nfs-smb.html>
*Interactive Tools*
* Very cool, thanks! * We have some Jupyter Notebook users locally (not (yet) in Galaxy), this could be useful to them.
*Scratch Object Stores, & per-user Object Stores:*
* If I'm not mistaken, these are both features mentioned in the recent GCC? * Do you know when the videos/slides will be available for this GCC? ( I just checkedhttps://www.youtube.com/@GalaxyProject/videos <https://www.youtube.com/@GalaxyProject/videos>)
Thank you,
Vlad
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Hi Hans/all, Good idea! I put them there. Regards, Vlad De: "Hans-Rudolf Hotz via Small-scale-admins" <small-scale-admins@lists.galaxyproject.org> À: "small-scale-admins" <small-scale-admins@lists.galaxyproject.org> Envoyé: Mardi 24 Septembre 2024 15:54:05 Objet: [Small-scale-admins] Re: Follow-up 19 Sept SSA meeting Hi Vlad to make sure nothing gets lost/unanswered, I suggest to put all your questions/ideas as topic suggestions for the next meeting: https://docs.google.com/document/d/1KTz4qxZBG4Z3sF23dVKPWXYz1mCNo2YDygSUHqtA... Regards, Hans-Rudolf On 24.09.2024 13:05, VLAD VISAN wrote:
Hi all,
Thank you (to Lucille I think) for the detailed note-taking <https://docs.google.com/document/d/1KTz4qxZBG4Z3sF23dVKPWXYz1mCNo2YDygSUHqtACQ8> for the last meeting. I was able to catch up & had a few short comments/questions
*Conda:*
* Thanks for the information, I informed my team * I've not used conda in Galaxy, so my suggestions might be off, but o maybe make sure that a user cannot somehow override the conda-forge channel (through tool XML or other). o Maybe even consider IP/URL blocking any official conda links?
*NFS Object Store*
* I use NFS mounting on my Galaxy instance too (for an Object Source, and for Data Libraries) * Once the NFS folder/partition is mounted, it can be used as a regular folder? (transparent for Galaxy) o So I'm wondering why the need for the plugin in Galaxy? * Does your use-case mandate an Object Store and not a File Source? o I see a sshfs File Source <https://github.com/galaxyproject/galaxy/blob/9524be3b7ac0a0656aedd7596fb87ab86653954a/lib/galaxy/files/sources/ssh.py> already exists and that sshfs is becoming competitive with NFS <https://blog.ja-ke.tech/2019/08/27/nas-performance-sshfs-nfs-smb.html>
*Interactive Tools*
* Very cool, thanks! * We have some Jupyter Notebook users locally (not (yet) in Galaxy), this could be useful to them.
*Scratch Object Stores, & per-user Object Stores:*
* If I'm not mistaken, these are both features mentioned in the recent GCC? * Do you know when the videos/slides will be available for this GCC? ( I just checkedhttps://www.youtube.com/@GalaxyProject/videos <https://www.youtube.com/@GalaxyProject/videos>)
Thank you,
Vlad
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participants (2)
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Hans-Rudolf Hotz -
VLAD VISAN