May 2023 - Smorgasbord2023 - lists.galaxyproject.org

GTN Smörgåsbord: Wrap-up & Certificates
by Saskia Hiltemann 29 May '23

29 May '23

Dear Participants, Thank you all for joining *GTN Smörgåsbord 3* last week! This email contains some final wrap-up information about the course. *Feedback* Please take a few moments to fill out our feedback survey <https://docs.google.com/forms/d/e/1FAIpQLSdth4MopsMalwye3jMl1xUhL-P-ZPOC6QY…>. This is HUGELY appreciated, your feedback not only helps us to improve the event in the future, but also increases the likelihood we can offer another edition of the course next year. Note that it is * mandatory if you want a certificate* *Certificates* Anybody who would like a certificate can get one. Here are the steps to obtain one and the timeline: 1. Submit your histories *until June 4th, 23:59 CEST *using the certificate bot on Slack (instructions <https://gallantries.github.io/video-library/certbot>) 2. Check what you have submitted using the */transcript* command, or by opening the certbot home page <https://gtnsmrgsbord.slack.com/app_redirect?app=A02F7B8DX7S> 3. Use the command * /request-certificate Your Name* when you have submitted everything you want listed on your certificate. 4. We aim to have your certificates ready by *June 12*. You will receive a message from the bot on Slack, it will appear certbot home page <https://gtnsmrgsbord.slack.com/app_redirect?app=A02F7B8DX7S>, and I will also send out an email. *Keep Learning* You can keep asking your questions on Slack this week, but there will be fewer instructors around so it may take a bit longer to get answers. After this week, please use the GTN matrix chat channel <https://matrix.to/#/#Galaxy-Training-Network_Lobby:gitter.im> for any questions about Galaxy tutorials. *Join the Community*This training wouldn't have been possible without the skills, effort, and ideas of countless community members. And guess what? *You can be one of them too!* We're inviting everyone who is interested, to join us in making Galaxy and the Training Network even better for everyone. There are countless ways you can get involved based on your interests! Whether it's contributing to tutorials, organizing community activities, fixing bugs, or updating documentation, your input is valued. Ready to jump in? Visit our "Contributing" guide on the Hub <https://galaxyproject.org/community/contributing/>for more information. *Useful Links* If you would like to stay involved in the community, please have a look at the following resources: - Keep learning with the Galaxy Training Network materials <https://training.galaxyproject.org> - Got an idea for a project around Galaxy but need some guidance? Have a look at the Galaxy Mentorship Network <https://galaxy-mentor-network.netlify.app/> - Connect with us on Matrix chat (Galaxy <https://matrix.to/#/#galaxyproject_Lobby:gitter.im> or GTN <https://matrix.to/#/#Galaxy-Training-Network_Lobby:gitter.im> channel) - Join the Galaxy Help Forum <https://help.galaxyproject.org> - Find Galaxy events <https://galaxyproject.org/events/> near you - Join a Galaxy community of practice <https://galaxyproject.org/community/practice> and connect with others with the same (research) interests as you! - Join a Galaxy regional community <https://galaxyproject.org/community/regional> and connect with others using Galaxy near you! - Follow us on Twitter (@gxytraining <https://twitter.com/gxytraining> and @galaxyproject <https://twitter.com/galaxyproject>) or Mastodon (GTN <https://mstdn.science/@gtn>, Galaxy <https://mstdn.science/@galaxyproject>) - Read one of the 10,000+ Galaxy publications <https://www.zotero.org/groups/1732893/galaxy?utm_source=smorgasbord&utm_med…> *Galaxy Community Conference* Finally, every summer the Galaxy community meets for a user conference. The next conference will take place in Brisbane, Australia on July 10-16 <https://galaxyproject.org/events/gcc2023/> and registration is still open! Hope to see you there! Thank you all for joining, we thoroughly enjoyed interacting with all of you last week. Hope to see you around in the community! Saskia Hiltemann & Helena Rasche *- on behalf of the organising committee * --- Saskia Hiltemann (she/her) Postdoctoral Researcher @ Erasmus Medical Center While I may be sending this email outside my normal office hours, I have no expectation to receive a reply outside of yours.

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Smörgåsbord 2023: Halfway done!
by Helena Rasche 24 May '23

24 May '23

Hello GTN Smörgåsbord 3 Participants! *Did you register, but not yet start?* If you haven't started yet, /*it's not too late*/!! Check out the course webpage to get started now <https://gallantries.github.io/video-library/events/smorgasbord3/#welcome-se…>! :) We'd love to see all 3000 of you that registered join us this week. Join the Galaxy Bioinformatics Training Slack via this link: http://gxy.io/gtn-slack *Did you already start? *We've met so many of you these first 2 days and it's been really exciting to see how many folks are interested in bioinformatics! It's so exciting for us. *New in Smörgåsbord 3* We are happy to announce that this year's program includes brand new modules on: * Bioconductor & R <https://gallantries.github.io/video-library/modules/bioconductor> * How to make your Workflows FAIR with RO-Crate <https://gallantries.github.io/video-library/modules/ro-crate> * One Health <https://gallantries.github.io/video-library/modules/one-health> - analysis of human, microbial, and viral data that affects the health of humans and ecosystems! Everything you need to know about the course, including the program, is listed on the course webpage https://gallantries.github.io/video-library/events/smorgasbord3/. *Format* As a reminder, this event is *at-your-own-pace* and *choose-your-own-adventure* style. We offer a large selection of tutorial videos and self-study materials, and you can pick and choose which ones to follow during the week based on your own interests and experience. The event will run 24/7 for 5 days, so you can start, stop and take breaks whenever is convenient for /you./ There will be a large team of instructors from the Galaxy community available 24/7 in Slack (chat) to help you with any questions you may have about the tutorials! *Hope to see all of you this week!* Please don't hesitate to contact us if you have any further questions. Ciao, Helena & Saskia /on behalf of the GTN Smörgåsbord organizing committee/ *P.S.: Common Questions* Q: What is Slack? A: Slack (https://slack.com/) is a chat platform. So if you get stuck, you can ask your question on Slack, and one of our instructors will try to answer it. Q: Do I need to install anything before the workshops? A: No, all you will need is a web browser. We recommend a modern browser such as Chrome, Firefox or Safari. (preferably not Internet Explorer) Q: Can I get a certificate? A: Yes, certificates of attendance will be available on request. It is explained on the schedule page. Q: Will the videos be captioned? A: Yes Q: Can I do a tutorial on a different day than the schedule? A: Yes, that is not a problem. You can do any tutorial on any day that you want!

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GTN Smörgåsbord: 1 week to go!
by Saskia Hiltemann 22 May '23

22 May '23

Hello GTN Smörgåsbord 3 Participants! Thank you for joining us for the upcoming training event *GTN Smörgåsbord 3 NEXT WEEK *(*May 22-26)!* We are happy to announce that this year's program will include new modules on Bioconductor & R <https://gallantries.github.io/video-library/modules/bioconductor>, RO-crates <https://gallantries.github.io/video-library/modules/ro-crate>, and a One Health <https://gallantries.github.io/video-library/modules/one-health> module, as well as many new or updated videos in the other modules! Everything you need to know about the course, including the (draft) program, is listed on the course webpage <https://gallantries.github.io/video-library/events/smorgasbord3/>. If you tried to join Slack previously but got a message that the link was expired, here is a new Slack invite link <http://gxy.io/gtn-slack>that should work. *At the start of the course..* When it is 22 May in your time zone and you are ready to start, go to the course webpage, and watch the intro video. We will explain the logistics for the week there. Afterwards, work your way through the rest of the "Welcome & Setup" section to get all the information you need to get the most out of the training week. And then it is time to get started! We provide a list of modules to choose from, find something that is interesting to you and just start the video and start learning at your own pace! If you are unsure where to start, just let us know in Slack and we can help you find something that fits your interests! *About Certificates* For those of you who would like to receive a certificate of attendance after the course, we have added more information about this to the course website. Like last year, we will use the Slack Certificate Bot for this. You can submit a link to your Galaxy history to the bot after each tutorial you complete, and at the end of the week you can use the bot to request your certificate. We will then create a *personalized certificate *for you, listing all the tutorials you completed during the week. It doesn't matter if you did 1 tutorial or 50, everybody who wants a certificate can get one! *Format* This event will be* at-your-own-pace *and *choose-your-own-adventure *style. We offer a large selection of tutorial videos and self-study materials, and you can pick and choose which ones to follow during the week based on your own interests and experience. The event will run 24/7 for 5 days, so you can start, stop and take breaks whenever is convenient for *you*. There will be a large team of instructors from the Galaxy community available 24/7 in Slack (chat) to help you with any questions you may have about the tutorials! *Slack* Come join us in Slack <http://gxy.io/gtn-slack> <http://gxy.io/gtn-slack>where all of the course discussion during the week will occur! Once you've signed up, you can introduce yourself in #social <https://gtnsmrgsbord.slack.com/archives/C01EDBVMHBQ>, ask any questions you may have ahead of the course, and meet your instructors and fellow participants! Some more information about how we will use Slack during this event can be found here <https://gallantries.github.io/video-library/slack>. * (**Having problems joining Slack?* Let us know in our GTN Gitter channel <https://gitter.im/Galaxy-Training-Network/Lobby> or email us) *Galaxy* If you don't have a Galaxy account yet, you can already create one ahead of time (instructions <https://training.galaxyproject.org/training-material/faqs/galaxy/account_cr…>). We recommend you pick one of the "big 3" servers (US, Europe, or Australia, whichever is closest to you) Looking forward to seeing you all in 1 week! Please don't hesitate to contact us if you have any further questions. Ciao, Helena & Saskia on behalf of the GTN Smörgåsbord organizing committee ---------------------------------------------------------------------------------------------- Practical Information When: May 22-26, 2023 (all time zones) Where: Online Costs: Free! Format: self-study using GTN training materials and video recordings. Support: on Slack (invite link <http://gxy.io/gtn-slack>) Website: link <https://gallantries.github.io/video-library/events/smorgasbord3/> Format of the Course This is an *asynchronous* course. This means that all trainings have been pre-recorded, and you can work through these videos at your own pace and according to your own schedule during the week. This means you can start and stop at whatever times you want. You can skip tutorials that you already know, or that may not be so interesting for you. You can join all 5 days, or only 1. That is all up to you. Common Questions *Q: Will the materials stay available after the course?* A: Yes! Everything you need will stay online after the workshop so you can continue working on them for as long as you want. *Q: What is Slack?* A: Slack (https://slack.com/) is a chat platform. So if you get stuck, you can ask your question on Slack, and one of our instructors will try to answer it. *Q: Do I need to install anything before the workshops?* A: No, all you will need is a web browser. We recommend a modern browser such as Chrome, Firefox or Safari. (preferably not Internet Explorer) *Q: Can I get a certificate?* A: Yes, certificates of attendance will be available on request. It is explained on the schedule page. *Q: Will the videos be captioned?* A: Yes *Q: Can I do a tutorial on a different day than the schedule?* A: Yes, that is not a problem. You can do any tutorial on any day that you want! *Q: Can I do a tutorial that's not in the program?* A: Yes! you can do any tutorial from the GTN website <https://training.galaxyproject.org>. Please make sure to check the *"Available on these Galaxies"* section in the overview box of the tutorial to see which Galaxy servers support the tutorial. --- Saskia Hiltemann (she/her) Postdoctoral Researcher @ Erasmus Medical Center While I may be sending this email outside my normal office hours, I have no expectation to receive a reply outside of yours.

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GTN Smörgåsbord 3: Three weeks to go!
by Saskia Hiltemann 01 May '23

01 May '23

Hello GTN Smörgåsbord 3 Participants! Thank you for joining us for the upcoming training event *GTN Smörgåsbord 3 *on *May 22-26!* Everything you need to know about the course, including the (draft) program, is listed on the course webpage <https://gallantries.github.io/video-library/events/smorgasbord3/>. We are happy to announce that this year's program will include new modules on Bioconductor & R <https://gallantries.github.io/video-library/modules/bioconductor>, and RO-crates <https://gallantries.github.io/video-library/modules/ro-crate>! *Format* This event will be* at-your-own-pace *and *choose-your-own-adventure *style. We offer a large selection of tutorial videos and self-study materials, and you can pick and choose which ones to follow during the week based on your own interests and experience. The event will run 24/7 for 5 days, so you can start, stop and take breaks whenever is convenient for *you*. There will be a large team of instructors from the Galaxy community available 24/7 in Slack (chat) to help you with any questions you may have about the tutorials! *Slack* Come join us in Slack <https://join.slack.com/t/gtnsmrgsbord/shared_invite/zt-x7vinbs1-BA~Kht6N86J…> where all of the course discussion during the week will occur! Once you've signed up, you can introduce yourself in #social <https://gtnsmrgsbord.slack.com/archives/C01EDBVMHBQ>, ask any questions you may have ahead of the course, and meet your instructors and fellow participants! Some more information about how we will use Slack during this event can be found here <https://gallantries.github.io/video-library/slack>. * (**Having problems joining Slack?* Let us know in our GTN Gitter channel <https://gitter.im/Galaxy-Training-Network/Lobby> or email us) *Galaxy* If you don't have a Galaxy account yet, you can already create one ahead of time (instructions <https://training.galaxyproject.org/training-material/faqs/galaxy/account_cr…>). We recommend you pick one of the "big 3" servers (US, Europe, or Australia, whichever is closest to you) Looking forward to seeing you all in 3 weeks! Please don't hesitate to contact us if you have any further questions. Ciao, Helena & Saskia on behalf of the GTN Tapas organizing committee ---------------------------------------------------------------------------------------------- Practical Information When: May 12-26, 2023 (all time zones) Where: Online Costs: Free! Format: self-study using GTN training materials and video recordings. Support: on Slack (invite link <https://join.slack.com/t/gtnsmrgsbord/shared_invite/zt-x7vinbs1-BA~Kht6N86J…> ) Website: link <https://gallantries.github.io/video-library/events/smorgasbord3/> Format of the Course This is an *asynchronous* course. This means that all trainings have been pre-recorded, and you can work through these videos at your own pace and according to your own schedule during the week. This means you can start and stop at whatever times you want. You can skip tutorials that you already know, or that may not be so interesting for you. You can join all 5 days, or only 1. That is all up to you. Common Questions *Q: Will the materials stay available after the course?* A: Yes! Everything you need will stay online after the workshop so you can continue working on them for as long as you want. *Q: What is Slack?* A: Slack (https://slack.com/) is a chat platform. So if you get stuck, you can ask your question on Slack, and one of our instructors will try to answer it. *Q: Do I need to install anything before the workshops?* A: No, all you will need is a web browser. We recommend a modern browser such as Chrome, Firefox or Safari. (preferably not Internet Explorer) *Q: Can I get a certificate?* A: Yes, certificates of attendance will be available on request. It is explained on the schedule page. *Q: Will the videos be captioned?* A: Yes *Q: Can I do a tutorial on a different day than the schedule?* A: Yes, that is not a problem. You can do any tutorial on any day that you want! *Q: Can I do a tutorial that's not in the program?* A: Yes! you can do any tutorial from the GTN website <https://training.galaxyproject.org>. Please make sure to check the *"Available on these Galaxies"* section in the overview box of the tutorial to see which Galaxy servers support the tutorial. --- Saskia Hiltemann (she/her) Postdoctoral Researcher @ Erasmus Medical Center While I may be sending this email outside my normal office hours, I have no expectation to receive a reply outside of yours.

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2024

2023

Smorgasbord2023 May 2023

2024

2023

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Smorgasbord2023 May 2023