[galaxy-commits] [galaxyproject/galaxy] c0e8a7: [16.07] Fix tool dependencies handling in Tool She...

GitHub noreply at github.com
Thu Sep 22 13:59:13 EDT 2016


  Branch: refs/heads/release_16.07
  Home:   https://github.com/galaxyproject/galaxy
  Commit: c0e8a7608351679b8ebdb71207339384161d6616
      https://github.com/galaxyproject/galaxy/commit/c0e8a7608351679b8ebdb71207339384161d6616
  Author: Dave B <dave at bx.psu.edu>
  Date:   2016-09-22 (Thu, 22 Sep 2016)

  Changed paths:
    M lib/galaxy/webapps/tool_shed/api/repositories.py
    M lib/galaxy/webapps/tool_shed/controllers/repository.py
    M lib/galaxy/webapps/tool_shed/model/__init__.py
    M lib/tool_shed/util/metadata_util.py

  Log Message:
  -----------
  [16.07] Fix tool dependencies handling in Tool Shed model (#2950)

* Fix the cause of toolshed test 1400 failing.

* Fix handling of repositories without tool dependencies.

* Fix tool dependency retrieval.

In some cases, a process might attempt to fetch tool dependencies for revision
1:7334f6d0ac17, but the repository has been updated, and tool dependency
metadata has been reassigned to e.g. 7:ce22ceec214a. This commit resolves
that issue.

* Correct the logic that returns an empty string for an empty dict.

* Fix getting latest revision with tool dependencies.

* Use self.app instead of trans.app




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