[galaxy-dev] Could anyone body tell me why our C program do not work in galaxy
dannonbaker at me.com
Fri Apr 22 10:32:00 EDT 2011
Without seeing an error message I'll guess that issue is that there is no C interpreter. Your program is a compiled executable.
Try the following and let me know (including any error messages) if it doesn't work:
shortest_path $infile1 $output
On Apr 22, 2011, at 2:12 AM, liyanhui607 wrote:
> Dear Sir,
> We have a program writen in C lanuage. It can run nomally in linux environment.
> We plan to add it to galaxy, but it did not work.
> The C file after complie named "shortest-path"
> The shortest-path.xml is as follow:
> Could anybody tell me what is wrong ? why it does not work?
> Thank you very much!
> Best Wishes!
> Yan-Hui Li
> <tool id="shortest_path_1" name="shortest_path">
> <command interpreter="C">./shortest_path $infile1 $output </command>
> <param format="text" name="infile1" type="data"
> <data format="tabular" name="output" />
> <param name="input" value="1"/>
> <param name="input" value="../GEO_dataset/expressed_genes_u133a.6k_u133p2.8k_20101024.txt"/>
> <param name="input" value="../ppi/hprd8_biogrid-2.0.58.ppi.txt"/>
> <output name="out_file1" file="expressed_genes_20101024.hprd8_biogrid-2.0.58.ppi.txt"/>
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