*Galaxy September 7, 2012 Distribution & News Brief*
http://wiki.g2.bx.psu.edu/DevNewsBriefs/2012_09_07
/*Highlights:*/
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*NCBI BLAST+ has moved* from the Galaxy distribution to the Galaxy's Main Tool Shed.
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*Tool Shed* *is now running Mercurial version 2.2.3*. Many updates and refinements including UI/metadata changes - read the full report.
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*Streamline local setup* with the *Reference Genome rsync Server*: same builds and indexes as on the public Galaxy Main instance.
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More *updates to* *Output and Error Handling* including updated documentation and enhancements to exit code checks.
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*TopHat2 / Bowtie2* latest support includes Tophat2 fusions output, Bowtie2 sorted BAMs, and a new RNA-seq Tutorial.
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*Trackster* updates include improved *support for* *bigWig / bigBed*, new support for *bedGraph*, and a new *search feature for GFF / GTF / BED* datasets.
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Plus many *other* *Workflow, API, Source, UI* *features* and a summary of *recent Galaxy Update* highlights.
http://bitbucket.org/galaxy/galaxy-dist
*new: * $ hg clone http://www.bx.psu.edu/hg/galaxy galaxy-dist
*upgrade:* $ hg pull -u -r e6444e7a1685
* *
*Thanks for using Galaxy!*
Jennifer Jackson & Galaxy Team
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