1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/changeset/449f0ed92b46/ changeset: 449f0ed92b46 user: jgoecks date: 2012-12-06 22:13:56 summary: When creating a new visualization for a dataset, default to dataset's dbkey. affected #: 1 file
diff -r e20afb791a6685c40440743a5973ff17ba90e875 -r 449f0ed92b4621093d2e1b38dee5894f2a9b959e lib/galaxy/webapps/galaxy/controllers/visualization.py --- a/lib/galaxy/webapps/galaxy/controllers/visualization.py +++ b/lib/galaxy/webapps/galaxy/controllers/visualization.py @@ -691,25 +691,33 @@ Display browser for the visualization denoted by id and add the datasets listed in `dataset_ids`. """
+ # Get dataset to add. + new_dataset_id = kwargs.get( "dataset_id", None ) + # Set up new browser if no id provided. if not id: + # Use dbkey from dataset to be added or from incoming parameter. + dbkey = None + if new_dataset_id: + dbkey = self.get_dataset( trans, new_dataset_id ).dbkey + if dbkey == '?': + dbkey = kwargs.get( "dbkey", None ) + return trans.fill_template( "tracks/browser.mako", config={}, - add_dataset=kwargs.get("dataset_id", None), - default_dbkey=kwargs.get("dbkey", None) ) + add_dataset=new_dataset_id, + default_dbkey=dbkey )
# Display saved visualization. vis = self.get_visualization( trans, id, check_ownership=False, check_accessible=True ) viz_config = self.get_visualization_config( trans, vis )
- # Get new dataset if specified. - new_dataset = kwargs.get("dataset_id", None) ''' FIXME: if new_dataset is not None: if trans.security.decode_id(new_dataset) in [ d["dataset_id"] for d in viz_config.get("tracks") ]: new_dataset = None # Already in browser, so don't add ''' - return trans.fill_template( 'tracks/browser.mako', config=viz_config, add_dataset=new_dataset ) + return trans.fill_template( 'tracks/browser.mako', config=viz_config, add_dataset=new_dataset_id )
@web.expose def circster( self, trans, id=None, hda_ldda=None, dataset_id=None, dbkey=None ):
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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