1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/fd9270d77652/ Changeset: fd9270d77652 User: Dave Bouvier Date: 2013-09-27 17:23:08 Summary: Set the job walltime to 10 minutes in the automated repository install and test framework. Affected #: 1 file
diff -r fe0beae12c30d25fcd192a67043aea2b1cfddafb -r fd9270d776525fafacc2ddd8e0171483b579381c test/install_and_test_tool_shed_repositories/functional_tests.py --- a/test/install_and_test_tool_shed_repositories/functional_tests.py +++ b/test/install_and_test_tool_shed_repositories/functional_tests.py @@ -134,6 +134,25 @@ </toolbox> '''
+ +job_conf_xml = '''<?xml version="1.0"?> +<!-- A test job config that explicitly configures job running the way it is configured by default (if there is no explicit config). --> +<job_conf> + <plugins> + <plugin id="local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner" workers="4"/> + </plugins> + <handlers> + <handler id="main"/> + </handlers> + <destinations> + <destination id="local" runner="local"/> + </destinations> + <limits> + <limit type="walltime">00:10:00</limit> + </limits> +</job_conf> +''' + # If we have a tool_data_table_conf.test.xml, set it up to be loaded when the UniverseApplication is started. # This allows one to specify a set of tool data that is used exclusively for testing, and not loaded into any # Galaxy instance. By default, this will be in the test-data-repo/location directory generated by buildbot_setup.sh. @@ -588,6 +607,7 @@ shed_tool_data_table_conf_file = os.environ.get( 'GALAXY_INSTALL_TEST_SHED_TOOL_DATA_TABLE_CONF', os.path.join( galaxy_test_tmp_dir, 'test_shed_tool_data_table_conf.xml' ) ) galaxy_tool_data_table_conf_file = os.environ.get( 'GALAXY_INSTALL_TEST_TOOL_DATA_TABLE_CONF', tool_data_table_conf ) galaxy_tool_conf_file = os.environ.get( 'GALAXY_INSTALL_TEST_TOOL_CONF', os.path.join( galaxy_test_tmp_dir, 'test_tool_conf.xml' ) ) + galaxy_job_conf_file = os.environ.get( 'GALAXY_INSTALL_TEST_JOB_CONF', os.path.join( galaxy_test_tmp_dir, 'test_job_conf.xml' ) ) galaxy_shed_tool_conf_file = os.environ.get( 'GALAXY_INSTALL_TEST_SHED_TOOL_CONF', os.path.join( galaxy_test_tmp_dir, 'test_shed_tool_conf.xml' ) ) galaxy_migrated_tool_conf_file = os.environ.get( 'GALAXY_INSTALL_TEST_MIGRATED_TOOL_CONF', os.path.join( galaxy_test_tmp_dir, 'test_migrated_tool_conf.xml' ) ) galaxy_tool_sheds_conf_file = os.environ.get( 'GALAXY_INSTALL_TEST_TOOL_SHEDS_CONF', os.path.join( galaxy_test_tmp_dir, 'test_tool_sheds_conf.xml' ) ) @@ -635,6 +655,8 @@ # ---- Start up a Galaxy instance ------------------------------------------------------ # Generate the tool_conf.xml file. file( galaxy_tool_conf_file, 'w' ).write( tool_conf_xml ) + # Generate the job_conf.xml file. + file( galaxy_job_conf_file, 'w' ).write( job_conf_xml ) # Generate the tool_sheds_conf.xml file, but only if a the user has not specified an existing one in the environment. if 'GALAXY_INSTALL_TEST_TOOL_SHEDS_CONF' not in os.environ: file( galaxy_tool_sheds_conf_file, 'w' ).write( tool_sheds_conf_xml ) @@ -656,6 +678,7 @@ datatype_converters_config_file = "datatype_converters_conf.xml.sample", file_path = galaxy_file_path, id_secret = galaxy_encode_secret, + job_config_file = galaxy_job_conf_file, job_queue_workers = 5, log_destination = "stdout", migrated_tools_config = galaxy_migrated_tool_conf_file,
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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