1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/44538b70d174/ Changeset: 44538b70d174 Branch: next-stable User: BjoernGruening Date: 2014-01-21 18:58:25 Summary: Add missing requirement tags. Affected #: 1 file
diff -r 683e4bc2f85e0570ba0121858ed06b702943c9fd -r 44538b70d174dd36836a88123a865e1147c016b5 lib/galaxy/datatypes/converters/sam_to_bam.xml --- a/lib/galaxy/datatypes/converters/sam_to_bam.xml +++ b/lib/galaxy/datatypes/converters/sam_to_bam.xml @@ -5,6 +5,9 @@ To fix this: (a) merge sam_to_bam tool in tools with this conversion (like fasta_to_len conversion); and (b) define a datatype-specific way to set converter parameters. --> + <requirements> + <requirement type="package">samtools</requirement> + </requirements><command interpreter="python">sam_to_bam.py $input1 $output</command><inputs><param name="input1" type="data" format="sam" label="SAM file"/>
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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