1 new changeset in galaxy-central:
http://bitbucket.org/galaxy/galaxy-central/changeset/7b2bc40bad02/ changeset: r5115:7b2bc40bad02 user: dannon date: 2011-02-23 20:01:58 summary: Initial commit of Mosaik and Freebayes. affected #: 5 files (302 bytes)
--- a/tool_conf.xml.sample Wed Feb 23 13:54:06 2011 -0500 +++ b/tool_conf.xml.sample Wed Feb 23 14:01:58 2011 -0500 @@ -291,6 +291,7 @@ <tool file="metag_tools/megablast_xml_parser.xml" /><tool file="sr_mapping/PerM.xml" /><tool file="sr_mapping/srma_wrapper.xml" /> + <tool file="sr_mapping/mosaik.xml"/></section><section name="NGS: Indel Analysis" id="indel_analysis"><tool file="indels/sam_indel_filter.xml" /> @@ -369,6 +370,7 @@ <tool file="human_genome_variation/beam.xml" /><tool file="human_genome_variation/lps.xml" /><tool file="human_genome_variation/hilbertvis.xml" /> + <tool file="human_genome_variation/freebayes.xml" /></section><section name="VCF Tools" id="vcf_tools"><tool file="vcf_tools/intersect.xml" />
--- a/tool_data_table_conf.xml.sample Wed Feb 23 13:54:06 2011 -0500 +++ b/tool_data_table_conf.xml.sample Wed Feb 23 14:01:58 2011 -0500 @@ -80,4 +80,9 @@ <columns>value, name, path</columns><file path="tool-data/ccat_configurations.loc" /></table> + <!-- Location of Mosaik files --> + <table name="mosaik_indexes" comment_char="#"> + <columns>value, dbkey, name, path</columns> + <file path="tool-data/mosaik_index.loc" /> + </table></tables>
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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