1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/changeset/84ee6eeedb41/ changeset: 84ee6eeedb41 user: natefoo date: 2012-01-23 17:04:04 summary: Ignore DrmCommunicationException when checking job state. Thanks Ed Kirton. affected #: 1 file
diff -r d56513828dc6f7c23b0e5b85f5ac33ce212587b7 -r 84ee6eeedb41b507c5e79d6f3e0d2a50a694adb6 lib/galaxy/jobs/runners/drmaa.py --- a/lib/galaxy/jobs/runners/drmaa.py +++ b/lib/galaxy/jobs/runners/drmaa.py @@ -278,6 +278,9 @@ log.debug("(%s/%s) job left DRM queue with following message: %s" % ( galaxy_job_id, job_id, e ) ) self.work_queue.put( ( 'finish', drm_job_state ) ) continue + except drmaa.DrmCommunicationException, e: + log.warning("(%s/%s) unable to communicate with DRM: %s" % ( galaxy_job_id, job_id, e )) + continue except Exception, e: # so we don't kill the monitor thread log.exception("(%s/%s) Unable to check job status" % ( galaxy_job_id, job_id ) )
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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