1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/5d0cfe53740b/ Changeset: 5d0cfe53740b User: guerler Date: 2013-07-19 20:56:39 Summary: bowtie2 wrapper update Affected #: 1 file
diff -r 883d7c4b387c0e701539b49e593144b7c027a64c -r 5d0cfe53740b554f2643a3518ea23807dfdb26a5 tools/sr_mapping/bowtie2_wrapper.xml --- a/tools/sr_mapping/bowtie2_wrapper.xml +++ b/tools/sr_mapping/bowtie2_wrapper.xml @@ -99,7 +99,7 @@
## rename unaligned sequence files #if $library.type == "paired" and $output_unaligned_reads_l and $output_unaligned_reads_r: - #set left = str(str($output_unaligned_reads_l).replace( '.dat', '.1.dat' )) + #set left = str($output_unaligned_reads_l).replace( '.dat', '.1.dat' ) #set right = str($output_unaligned_reads_l).replace( '.dat', '.2.dat' )
mv $left $output_unaligned_reads_l; @@ -317,6 +317,7 @@ Trim n-bases from 5' (left) end of each read before alignment.
*-3/--trim3 (default: 0)* + Trim n-bases from 3' (right) end of each read before alignment.
*--nofw/--norc (default: both strands enabled)*
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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