1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/changeset/d93edf2dc436/ changeset: d93edf2dc436 user: dan date: 2011-12-08 20:26:34 summary: Allow tools with zero inputs. Resolves #463. affected #: 2 files
diff -r 0639c7b530774aea53776cc207b39cee22a5499a -r d93edf2dc43612e38a9e7aafac4d50fba60ae647 lib/galaxy/tools/__init__.py --- a/lib/galaxy/tools/__init__.py +++ b/lib/galaxy/tools/__init__.py @@ -386,6 +386,16 @@ self.config_file = config_file self.tool_dir = os.path.dirname( config_file ) self.app = app + #setup initial attribute values + self.inputs = odict() + self.inputs_by_page = list() + self.display_by_page = list() + self.action = '/tool_runner/index' + self.target = 'galaxy_main' + self.method = 'post' + self.check_values = True + self.nginx_upload = False + self.input_required = False # Define a place to keep track of all input parameters. These # differ from the inputs dictionary in that inputs can be page # elements like conditionals, but input_params are basic form @@ -565,11 +575,12 @@ """ # Load parameters (optional) input_elem = root.find("inputs") + enctypes = set() if input_elem: # Handle properties of the input form - self.check_values = util.string_as_bool( input_elem.get("check_values", "true") ) - self.nginx_upload = util.string_as_bool( input_elem.get( "nginx_upload", "false" ) ) - self.action = input_elem.get( 'action', '/tool_runner/index' ) + self.check_values = util.string_as_bool( input_elem.get("check_values", self.check_values ) ) + self.nginx_upload = util.string_as_bool( input_elem.get( "nginx_upload", self.nginx_upload ) ) + self.action = input_elem.get( 'action', self.action ) # If we have an nginx upload, save the action as a tuple instead of # a string. The actual action needs to get url_for run to add any # prefixes, and we want to avoid adding the prefix to the @@ -582,13 +593,9 @@ 'hidden POST parameters' ) self.action = (self.app.config.nginx_upload_path + '?nginx_redir=', urllib.unquote_plus(self.action)) - self.target = input_elem.get( "target", "galaxy_main" ) - self.method = input_elem.get( "method", "post" ) + self.target = input_elem.get( "target", self.target ) + self.method = input_elem.get( "method", self.method ) # Parse the actual parameters - self.inputs = odict() - self.inputs_by_page = list() - self.display_by_page = list() - enctypes = set() # Handle multiple page case pages = input_elem.findall( "page" ) for page in ( pages or [ input_elem ] ): @@ -596,22 +603,24 @@ self.inputs_by_page.append( inputs ) self.inputs.update( inputs ) self.display_by_page.append( display ) - self.display = self.display_by_page[0] - self.npages = len( self.inputs_by_page ) - self.last_page = len( self.inputs_by_page ) - 1 - self.has_multiple_pages = bool( self.last_page ) - # Determine the needed enctype for the form - if len( enctypes ) == 0: - self.enctype = "application/x-www-form-urlencoded" - elif len( enctypes ) == 1: - self.enctype = enctypes.pop() - else: - raise Exception, "Conflicting required enctypes: %s" % str( enctypes ) + else: + self.inputs_by_page.append( self.inputs ) + self.display_by_page.append( None ) + self.display = self.display_by_page[0] + self.npages = len( self.inputs_by_page ) + self.last_page = len( self.inputs_by_page ) - 1 + self.has_multiple_pages = bool( self.last_page ) + # Determine the needed enctype for the form + if len( enctypes ) == 0: + self.enctype = "application/x-www-form-urlencoded" + elif len( enctypes ) == 1: + self.enctype = enctypes.pop() + else: + raise Exception, "Conflicting required enctypes: %s" % str( enctypes ) # Check if the tool either has no parameters or only hidden (and # thus hardcoded) parameters. FIXME: hidden parameters aren't # parameters at all really, and should be passed in a different # way, making this check easier. - self.input_required = False for param in self.inputs.values(): if not isinstance( param, ( HiddenToolParameter, BaseURLToolParameter ) ): self.input_required = True @@ -943,7 +952,7 @@ return False # This is probably the best bet for detecting external web tools # right now - if self.action != "/tool_runner/index": + if self.tool_type.startswith( 'data_source' ): return False # HACK: upload is (as always) a special case becuase file parameters # can't be persisted.
diff -r 0639c7b530774aea53776cc207b39cee22a5499a -r d93edf2dc43612e38a9e7aafac4d50fba60ae647 templates/root/tool_menu.mako --- a/templates/root/tool_menu.mako +++ b/templates/root/tool_menu.mako @@ -13,7 +13,7 @@ <div class="toolTitleNoSection"> %endif <% - if tool.input_required: + if not tool.tool_type.startswith( 'data_source' ): link = h.url_for( controller='tool_runner', tool_id=tool.id ) else: link = h.url_for( tool.action, ** tool.get_static_param_values( t ) )
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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