1 new changeset in galaxy-central:
http://bitbucket.org/galaxy/galaxy-central/changeset/0cb1f1f68a86/ changeset: r5473:0cb1f1f68a86 user: kanwei date: 2011-04-28 19:17:51 summary: trackster: Fix filters, restore name of IntervalIndex provider affected #: 1 file (11 bytes)
--- a/lib/galaxy/visualization/tracks/data_providers.py Thu Apr 28 12:11:27 2011 -0400 +++ b/lib/galaxy/visualization/tracks/data_providers.py Thu Apr 28 13:17:51 2011 -0400 @@ -417,7 +417,7 @@
return filters
-class TabixDataProvider( TracksDataProvider, FilterableMixin ): +class TabixDataProvider( FilterableMixin, TracksDataProvider ): """ Tabix index data provider for the Galaxy track browser. """ @@ -448,7 +448,7 @@ iterator = self.get_iterator( chrom, start, end ) return self.process_data(iterator, **kwargs)
-class GffDataProvider( TracksDataProvider, FilterableMixin ): +class IntervalIndexDataProvider( FilterableMixin, TracksDataProvider ): col_name_data_attr_mapping = { 4 : { 'index': 4 , 'name' : 'Score' } }
def write_data_to_file( self, chrom, start, end, filename ): @@ -653,7 +653,7 @@ # is original dataset type. TODO: This needs to be more flexible. dataset_type_name_to_data_provider = { "tabix": { Vcf: VcfDataProvider, Bed: BedDataProvider, "default" : TabixDataProvider }, - "interval_index": { Gff: GffDataProvider, Gtf: GffDataProvider }, + "interval_index": IntervalIndexDataProvider, "bai": BamDataProvider, "summary_tree": SummaryTreeDataProvider, "bigwig": BigWigDataProvider,
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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