1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/changeset/f9ca1c23ae7d/ changeset: f9ca1c23ae7d user: dan date: 2012-01-27 16:46:58 summary: GATK: add newly introduced gatkreport datatype, currently used by variant eval. affected #: 2 files
diff -r d8af2f7b1f35d9ad654995e52fff6611cdbd0d2d -r f9ca1c23ae7d2614c002257365d67a3eae98228e datatypes_conf.xml.sample --- a/datatypes_conf.xml.sample +++ b/datatypes_conf.xml.sample @@ -98,6 +98,7 @@ <converter file="picard_interval_list_to_bed6_converter.xml" target_datatype="bed6"/></datatype><datatype extension="gatk_interval" type="galaxy.datatypes.data:Text" subclass="True" display_in_upload="True"/> + <datatype extension="gatk_table" type="galaxy.datatypes.data:Text" subclass="True" display_in_upload="True"/><datatype extension="gatk_dbsnp" type="galaxy.datatypes.tabular:Tabular" subclass="True" display_in_upload="True"/><datatype extension="gatk_tranche" type="galaxy.datatypes.tabular:Tabular" subclass="True" display_in_upload="True"/><datatype extension="gatk_recal" type="galaxy.datatypes.tabular:Tabular" subclass="True" display_in_upload="True"/>
diff -r d8af2f7b1f35d9ad654995e52fff6611cdbd0d2d -r f9ca1c23ae7d2614c002257365d67a3eae98228e tools/gatk/variant_eval.xml --- a/tools/gatk/variant_eval.xml +++ b/tools/gatk/variant_eval.xml @@ -1,4 +1,4 @@ -<tool id="gatk_variant_eval" name="Eval Variants" version="0.0.6"> +<tool id="gatk_variant_eval" name="Eval Variants" version="0.0.7"><description></description><requirements><requirement type="package" version="1.4">gatk</requirement> @@ -495,7 +495,7 @@
</inputs><outputs> - <data format="tabular" name="output_table" label="${tool.name} on ${on_string} (table)" /> + <data format="gatkreport" name="output_table" label="${tool.name} on ${on_string} (table)" /><data format="txt" name="output_log" label="${tool.name} on ${on_string} (log)" /></outputs><tests>
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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