1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/changeset/24b474fd29bc/ changeset: 24b474fd29bc user: dan date: 2012-04-02 16:09:00 summary: Fix for --multiallelic in Unified Genotyper. affected #: 1 file
diff -r 4dd7564268fcd4f5bd3275fa3b5da012b7adefb5 -r 24b474fd29bcfddabd996e985c72872e21c8c0f8 tools/gatk/unified_genotyper.xml --- a/tools/gatk/unified_genotyper.xml +++ b/tools/gatk/unified_genotyper.xml @@ -138,6 +138,7 @@ --excludeAnnotation "${annotation}" #end for #end if + ${analysis_param_type.multiallelic} ' ## #if str( $analysis_param_type.snpEff_rod_bind_type.snpEff_rod_bind_type_selector ) == 'set_snpEff': ## -p '--annotation "SnpEff"' @@ -145,7 +146,6 @@ ## #else: ## -p '--excludeAnnotation "SnpEff"' ## #end if - ${analysis_param_type.multiallelic} #end if </command><inputs>
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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