Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 5624323a337a5d6176d3bb9be3bef599e65167b1 https://github.com/galaxyproject/galaxy/commit/5624323a337a5d6176d3bb9be3bef... Author: mvdbeek m.vandenbeek@gmail.com Date: 2018-08-15 (Wed, 15 Aug 2018)
Changed paths: A .ci/jenkins/framework-py3/run_tests.sh M run_tests.sh
Log Message: ----------- Add framework_py3 test target
Commit: fc464f975878867ddc8ef90818db9faab31c7368 https://github.com/galaxyproject/galaxy/commit/fc464f975878867ddc8ef90818db9... Author: mvdbeek m.vandenbeek@gmail.com Date: 2018-08-15 (Wed, 15 Aug 2018)
Changed paths: M test/functional/tools/metadata_biom1.xml
Log Message: ----------- Allow 4 lines diff to acount for the prefix of python2 unicode strings
Commit: 58067b4c896df7f2f48f3c7b6f4c92f9c6d6f265 https://github.com/galaxyproject/galaxy/commit/58067b4c896df7f2f48f3c7b6f4c9... Author: mvdbeek m.vandenbeek@gmail.com Date: 2018-08-15 (Wed, 15 Aug 2018)
Changed paths: M lib/galaxy/datatypes/data.py
Log Message: ----------- Fix count_lines function for compressed datatypes that inherit from Text
Commit: 79ec064214030badbc64694213db0ce4865b5e64 https://github.com/galaxyproject/galaxy/commit/79ec064214030badbc64694213db0... Author: mvdbeek m.vandenbeek@gmail.com Date: 2018-08-15 (Wed, 15 Aug 2018)
Changed paths: M lib/galaxy/datatypes/text.py
Log Message: ----------- py3: Fix Biom1 datatype
Commit: 37132212fe5e1fdf7f43e41c59eac051bfb8f389 https://github.com/galaxyproject/galaxy/commit/37132212fe5e1fdf7f43e41c59eac... Author: mvdbeek m.vandenbeek@gmail.com Date: 2018-08-15 (Wed, 15 Aug 2018)
Changed paths: M lib/galaxy/jobs/splitters/multi.py
Log Message: ----------- py3: Fix file splitting for parallelism
Commit: f831c616cb418f72baa1aae420b47a49a0aacc3c https://github.com/galaxyproject/galaxy/commit/f831c616cb418f72baa1aae420b47... Author: mvdbeek m.vandenbeek@gmail.com Date: 2018-08-15 (Wed, 15 Aug 2018)
Changed paths: M lib/galaxy/tools/wrappers.py
Log Message: ----------- py3: fix paths_as_file functionality
Commit: 70640071224745f61d756ed1475b5a03c85f4f40 https://github.com/galaxyproject/galaxy/commit/70640071224745f61d756ed1475b5... Author: mvdbeek m.vandenbeek@gmail.com Date: 2018-08-15 (Wed, 15 Aug 2018)
Changed paths: M lib/galaxy/util/object_wrapper.py
Log Message: ----------- Don't log error to provide arguments to __new__ for types that don't take arguments
This is just very verbose and unneeded.
Commit: ea0e3ffeb779fee900aa8dbc33773a921e39ec9c https://github.com/galaxyproject/galaxy/commit/ea0e3ffeb779fee900aa8dbc33773... Author: mvdbeek m.vandenbeek@gmail.com Date: 2018-08-15 (Wed, 15 Aug 2018)
Changed paths: M lib/galaxy/tools/parameters/output_collect.py
Log Message: ----------- py3: Fix dataset dataset collection
Commit: a927413df22ff3454cf6c691f851cf54673eefb7 https://github.com/galaxyproject/galaxy/commit/a927413df22ff3454cf6c691f851c... Author: mvdbeek m.vandenbeek@gmail.com Date: 2018-08-15 (Wed, 15 Aug 2018)
Changed paths: M test/functional/tools/parallelism.xml M test/functional/tools/parallelism_optional.xml
Log Message: ----------- Use exit code and quote file parameters for paralellism test tools
Commit: b041e41155ac18252c46364ac409a9695d9f8bfb https://github.com/galaxyproject/galaxy/commit/b041e41155ac18252c46364ac409a... Author: mvdbeek m.vandenbeek@gmail.com Date: 2018-08-15 (Wed, 15 Aug 2018)
Changed paths: M lib/galaxy/tools/evaluation.py
Log Message: ----------- Write configfile in binary mode
This fixes the unicode_stream tool on docker.
Commit: 79decc3ba77c5fbcaf36a0cbb9aace16512bcf9d https://github.com/galaxyproject/galaxy/commit/79decc3ba77c5fbcaf36a0cbb9aac... Author: mvdbeek m.vandenbeek@gmail.com Date: 2018-08-16 (Thu, 16 Aug 2018)
Changed paths: M lib/galaxy/tools/execute.py
Log Message: ----------- Use OrderedDict to collect implicit collections
This should fix randomly failing tests that rely on the order of the implcit collection elements, like `test_map_over_two_collections_unlinked`.
Commit: c430d4a6509375c5aaf658f149b3038aa8f34883 https://github.com/galaxyproject/galaxy/commit/c430d4a6509375c5aaf658f149b30... Author: mvdbeek m.vandenbeek@gmail.com Date: 2018-08-16 (Thu, 16 Aug 2018)
Changed paths: M test/base/driver_util.py
Log Message: ----------- Fix selenium test setup
Commit: 3957ed91e2d25faae9100c85bc19b9a1c5b3d68e https://github.com/galaxyproject/galaxy/commit/3957ed91e2d25faae9100c85bc19b... Author: mvdbeek m.vandenbeek@gmail.com Date: 2018-08-16 (Thu, 16 Aug 2018)
Changed paths: M templates/display_common.mako M templates/legacy/grid_base.mako M templates/tagging_common.mako M templates/webapps/tool_shed/repository/tool_form.mako
Log Message: ----------- Fix errors found during selenium testing
Commit: ae9effa61005504c51ca11adbbf6b70f95fab3b8 https://github.com/galaxyproject/galaxy/commit/ae9effa61005504c51ca11adbbf6b... Author: mvdbeek m.vandenbeek@gmail.com Date: 2018-08-16 (Thu, 16 Aug 2018)
Changed paths: A .ci/jenkins/selenium-py3/run_tests.sh
Log Message: ----------- Add selenium py3 jenkins setup
Commit: fb86e96bffecaef3861ce68db963c22aee193d54 https://github.com/galaxyproject/galaxy/commit/fb86e96bffecaef3861ce68db963c... Author: mvdbeek m.vandenbeek@gmail.com Date: 2018-08-16 (Thu, 16 Aug 2018)
Changed paths: M lib/galaxy/web/framework/helpers/grids.py
Log Message: ----------- Skip decoding to unicode strings in grids
At this point we should not have bytestrings anymore (we might, but if we do we should fix that instead).
Commit: 7559b90a692a72da2556c61b65c8615ddff822a5 https://github.com/galaxyproject/galaxy/commit/7559b90a692a72da2556c61b65c86... Author: mvdbeek m.vandenbeek@gmail.com Date: 2018-08-16 (Thu, 16 Aug 2018)
Changed paths: M test/base/driver_util.py M test/functional/test_toolbox.py A test/functional/test_toolbox_pytest.py
Log Message: ----------- Setup a simple pytest tool test
Commit: d9f394793897a4429664027cbdaacbb8fca6d4e2 https://github.com/galaxyproject/galaxy/commit/d9f394793897a4429664027cbdaac... Author: Dannon dannon.baker@gmail.com Date: 2018-08-16 (Thu, 16 Aug 2018)
Changed paths: A .ci/jenkins/framework-py3/run_tests.sh A .ci/jenkins/selenium-py3/run_tests.sh M lib/galaxy/datatypes/data.py M lib/galaxy/datatypes/text.py M lib/galaxy/jobs/splitters/multi.py M lib/galaxy/tools/evaluation.py M lib/galaxy/tools/execute.py M lib/galaxy/tools/parameters/output_collect.py M lib/galaxy/tools/wrappers.py M lib/galaxy/util/object_wrapper.py M lib/galaxy/web/framework/helpers/grids.py M run_tests.sh M templates/display_common.mako M templates/legacy/grid_base.mako M templates/tagging_common.mako M templates/webapps/tool_shed/repository/tool_form.mako M test/base/driver_util.py M test/functional/test_toolbox.py A test/functional/test_toolbox_pytest.py M test/functional/tools/metadata_biom1.xml M test/functional/tools/parallelism.xml M test/functional/tools/parallelism_optional.xml
Log Message: ----------- Merge pull request #6605 from mvdbeek/enable_and_fix_framework_py3_test
Enable and fix framework py3 tests
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