1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/93e9f520616c/ Changeset: 93e9f520616c User: Dave Bouvier Date: 2013-06-24 22:30:23 Summary: Fix bug with installing tool dependencies when new_file_path is not set in the Galaxy configuration file. Affected #: 1 file
diff -r be547fe12a1e1b02bc4c7e79834739c590797526 -r 93e9f520616ce9bc066c5e43a0e4d9d977a94192 lib/tool_shed/galaxy_install/tool_dependencies/common_util.py --- a/lib/tool_shed/galaxy_install/tool_dependencies/common_util.py +++ b/lib/tool_shed/galaxy_install/tool_dependencies/common_util.py @@ -240,13 +240,13 @@ if istar( file_path ): # <action type="download_by_url">http://sourceforge.net/projects/samtools/files/samtools/0.1.18/samtools-0.1....</action> extract_tar( file_path, install_dir ) - dir = tar_extraction_directory( install_dir, file_path ) + dir = tar_extraction_directory( install_dir, downloaded_file_name ) elif isjar( file_path ): dir = os.path.curdir elif iszip( file_path ): # <action type="download_by_url">http://downloads.sourceforge.net/project/picard/picard-tools/1.56/picard-too...</action> zip_archive_extracted = extract_zip( file_path, install_dir ) - dir = zip_extraction_directory( install_dir, file_path ) + dir = zip_extraction_directory( install_dir, downloaded_file_name ) else: dir = install_dir else:
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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