Branch: refs/heads/python26_workaround Home: https://github.com/galaxyproject/galaxy Commit: 49d5222beb9659df7b2d1f043003dd21b1ce95c3 https://github.com/galaxyproject/galaxy/commit/49d5222beb9659df7b2d1f043003d... Author: Enis Afgan <afgane@gmail.com> Date: 2015-07-27 (Mon, 27 Jul 2015) Changed paths: A LICENSE A README.md Log Message: ----------- Initial commit Commit: 01d4721c2f08ecbfe3351b76382f3f33f86d8e4a https://github.com/galaxyproject/galaxy/commit/01d4721c2f08ecbfe3351b76382f3... Author: Enis Afgan <afgane@gmail.com> Date: 2015-07-27 (Mon, 27 Jul 2015) Changed paths: M README.md A defaults/main.yml A files/install_tool_shed_tools.py A files/shed_tool_list_file.yaml A meta/main.yml A tasks/main.yml A tasks/tools.yml Log Message: ----------- Initial role implementation Commit: 725bd087dd29400fbc37cda223df3d311d2634e7 https://github.com/galaxyproject/galaxy/commit/725bd087dd29400fbc37cda223df3... Author: Enis Afgan <afgane@gmail.com> Date: 2015-08-03 (Mon, 03 Aug 2015) Changed paths: M README.md M defaults/main.yml M tasks/main.yml Log Message: ----------- Rename control-flow variable from install_tools to galaxy_install_tools Commit: 1cda2cc5916ae2e298dcb76bd4c69cf5d83c7229 https://github.com/galaxyproject/galaxy/commit/1cda2cc5916ae2e298dcb76bd4c69... Author: Enis Afgan <afgane@gmail.com> Date: 2015-08-04 (Tue, 04 Aug 2015) Changed paths: M README.md M defaults/main.yml Log Message: ----------- Add a default to use the localhost Galaxy instance Commit: bfdd53c19e3bb17669bb2b3c9409cf6fe59b7e26 https://github.com/galaxyproject/galaxy/commit/bfdd53c19e3bb17669bb2b3c9409c... Author: Enis Afgan <afgane@gmail.com> Date: 2015-08-04 (Tue, 04 Aug 2015) Changed paths: M README.md M defaults/main.yml A files/README.md A files/dbkeys_list.yaml.sample R files/shed_tool_list_file.yaml A files/tool_list.yaml A files/tool_list.yaml.sample Log Message: ----------- Add/update sample tool list files Commit: 1d2f3526782e7c8efbab3dc0861b6c1df7c14fcb https://github.com/galaxyproject/galaxy/commit/1d2f3526782e7c8efbab3dc0861b6... Author: Enis Afgan <afgane@gmail.com> Date: 2015-08-05 (Wed, 05 Aug 2015) Changed paths: M README.md M defaults/main.yml M files/README.md M files/install_tool_shed_tools.py M tasks/tools.yml Log Message: ----------- Rename variable and corresponding file shed_tool_list_file to tool_list_file Commit: 5a0261ae12929edafcdf01012bf7f36f52497b48 https://github.com/galaxyproject/galaxy/commit/5a0261ae12929edafcdf01012bf7f... Author: Enis Afgan <afgane@gmail.com> Date: 2015-08-06 (Thu, 06 Aug 2015) Changed paths: M files/install_tool_shed_tools.py Log Message: ----------- Replace OptionParser with ArgumentParser Commit: 77748d8b3713083677baebcb6c068c20b486497c https://github.com/galaxyproject/galaxy/commit/77748d8b3713083677baebcb6c068... Author: Enis Afgan <afgane@gmail.com> Date: 2015-08-06 (Thu, 06 Aug 2015) Changed paths: M files/install_tool_shed_tools.py Log Message: ----------- Add command line options to allow an individual tool to be installed without providing a YAML file Commit: 5c0c23935f79051b6781f9797c0a61ac3aa72ce3 https://github.com/galaxyproject/galaxy/commit/5c0c23935f79051b6781f9797c0a6... Author: Enis Afgan <afgane@gmail.com> Date: 2015-08-06 (Thu, 06 Aug 2015) Changed paths: M README.md Log Message: ----------- Update README Commit: dc4e9a5cfc9d390cfb32130c9b9107b34e008958 https://github.com/galaxyproject/galaxy/commit/dc4e9a5cfc9d390cfb32130c9b910... Author: Enis Afgan <afgane@gmail.com> Date: 2015-08-06 (Thu, 06 Aug 2015) Changed paths: M files/install_tool_shed_tools.py Log Message: ----------- Remove dev leftovers... Commit: 44e73cacb47841b520cfd3be23ee06f6aff306b3 https://github.com/galaxyproject/galaxy/commit/44e73cacb47841b520cfd3be23ee0... Author: Enis Afgan <afgane@gmail.com> Date: 2015-08-10 (Mon, 10 Aug 2015) Changed paths: M files/install_tool_shed_tools.py Log Message: ----------- Keep track of tools that installed successfully. Commit: 87c28325bb080685ccbd6c91c0eba065bf22694f https://github.com/galaxyproject/galaxy/commit/87c28325bb080685ccbd6c91c0eba... Author: Nate Coraor <nate@bx.psu.edu> Date: 2015-08-13 (Thu, 13 Aug 2015) Changed paths: M README.md M defaults/main.yml M tasks/tools.yml Log Message: ----------- Role-scope variables Commit: 8bd6a3e62a0bc59eb15992686d957d9123ba63c5 https://github.com/galaxyproject/galaxy/commit/8bd6a3e62a0bc59eb15992686d957... Author: Enis Afgan <afgane@gmail.com> Date: 2015-08-13 (Thu, 13 Aug 2015) Changed paths: M README.md M defaults/main.yml M tasks/tools.yml Log Message: ----------- Merge pull request #1 from natefoo/master Role-scope variables Commit: 849e1fcf4a7d5dcdfce0bc16205e73c7c60f56e2 https://github.com/galaxyproject/galaxy/commit/849e1fcf4a7d5dcdfce0bc16205e7... Author: Enis Afgan <afgane@gmail.com> Date: 2015-08-14 (Fri, 14 Aug 2015) Changed paths: M README.md Log Message: ----------- Update README Commit: ab64c06135da40cbff5a34823b7e57655986b3a8 https://github.com/galaxyproject/galaxy/commit/ab64c06135da40cbff5a34823b7e5... Author: Enis Afgan <afgane@gmail.com> Date: 2015-08-14 (Fri, 14 Aug 2015) Changed paths: M files/install_tool_shed_tools.py Log Message: ----------- Fix one of the Tool Shed ID names Commit: b9b006f749f93e4703e1e691bcf12780e352d587 https://github.com/galaxyproject/galaxy/commit/b9b006f749f93e4703e1e691bcf12... Author: Enis Afgan <afgane@gmail.com> Date: 2015-08-14 (Fri, 14 Aug 2015) Changed paths: M README.md M defaults/main.yml A files/manage_bootstrap_user.py A tasks/bootstrap_user.yml M tasks/main.yml A tasks/restart_galaxy.yml Log Message: ----------- Add an option to create (and delete) a bootstrap user as part of the tool installation process Commit: 667667ddeb5023df642bf9e088af76e4a8f7b880 https://github.com/galaxyproject/galaxy/commit/667667ddeb5023df642bf9e088af7... Author: Enis Afgan <afgane@gmail.com> Date: 2015-08-18 (Tue, 18 Aug 2015) Changed paths: M README.md Log Message: ----------- Update README Commit: f3d963054eeca1afcc06a4480db92e16f17447b3 https://github.com/galaxyproject/galaxy/commit/f3d963054eeca1afcc06a4480db92... Author: Enis Afgan <afgane@gmail.com> Date: 2015-08-24 (Mon, 24 Aug 2015) Changed paths: M files/install_tool_shed_tools.py Log Message: ----------- Update function to grabbing installed tool revisions to be more compatible with the required input for the tool installation function Commit: 7bae7d63c2622b7f531af225392d83bf78fa7e13 https://github.com/galaxyproject/galaxy/commit/7bae7d63c2622b7f531af225392d8... Author: Enis Afgan <afgane@gmail.com> Date: 2015-08-24 (Mon, 24 Aug 2015) Changed paths: M files/install_tool_shed_tools.py Log Message: ----------- Match up tools from the tool panel and those obtained from the /api/tool_shed_repositories endpoint to create a more complete list of tools installed on a Galaxy instance Commit: 759d064897969fc39525aef7a9493f0d145e3ca5 https://github.com/galaxyproject/galaxy/commit/759d064897969fc39525aef7a9493... Author: Enis Afgan <afgane@gmail.com> Date: 2015-08-24 (Mon, 24 Aug 2015) Changed paths: M files/install_tool_shed_tools.py Log Message: ----------- A bit of code cleanup Commit: 952b3aba536bb6923e7a7f8846c04204bc8b7c51 https://github.com/galaxyproject/galaxy/commit/952b3aba536bb6923e7a7f8846c04... Author: Enis Afgan <afgane@gmail.com> Date: 2015-08-25 (Tue, 25 Aug 2015) Changed paths: M files/install_tool_shed_tools.py Log Message: ----------- Add an option to omit tools based on their name from the returned list of installed tools Commit: 8dc2e7ce2a0821c3dba9feb972ba4fa22181c4c7 https://github.com/galaxyproject/galaxy/commit/8dc2e7ce2a0821c3dba9feb972ba4... Author: nuwan_ag <nuwan.ag@gmail.com> Date: 2015-09-09 (Wed, 09 Sep 2015) Changed paths: M tasks/bootstrap_user.yml M tasks/main.yml Log Message: ----------- Fix execution order and short-circuit issue when installing tools Commit: b4c010cd4f04f2cbc6799aaa4fdd3954bbb23918 https://github.com/galaxyproject/galaxy/commit/b4c010cd4f04f2cbc6799aaa4fdd3... Author: nuwan_ag <nuwan.ag@gmail.com> Date: 2015-09-09 (Wed, 09 Sep 2015) Changed paths: M tasks/main.yml Log Message: ----------- Passed variable instead of value Commit: 6e4d52ff185160c93fe30b9a164356a4fe7e918b https://github.com/galaxyproject/galaxy/commit/6e4d52ff185160c93fe30b9a16435... Author: nuwan_ag <nuwan.ag@gmail.com> Date: 2015-09-09 (Wed, 09 Sep 2015) Changed paths: M tasks/bootstrap_user.yml Log Message: ----------- Fixed conditional evaluation when variable is undefined Commit: 86226744f50730cfe7326b8943367ce526a5a719 https://github.com/galaxyproject/galaxy/commit/86226744f50730cfe7326b8943367... Author: Enis Afgan <afgane@gmail.com> Date: 2015-09-09 (Wed, 09 Sep 2015) Changed paths: M tasks/bootstrap_user.yml M tasks/main.yml Log Message: ----------- Merge pull request #4 from nuwang/master Fix execution order and short-circuit issue when installing tools Commit: e9550624506a1666073dd9ea5acbc0a11805752c https://github.com/galaxyproject/galaxy/commit/e9550624506a1666073dd9ea5acbc... Author: nuwan_ag <nuwan.ag@gmail.com> Date: 2015-09-19 (Sat, 19 Sep 2015) Changed paths: M tasks/bootstrap_user.yml Log Message: ----------- Remove bootstrap user from galaxy admin list Commit: 63c17f002d039479cd85a448464443ac11cf9652 https://github.com/galaxyproject/galaxy/commit/63c17f002d039479cd85a44846444... Author: Enis Afgan <afgane@gmail.com> Date: 2015-09-19 (Sat, 19 Sep 2015) Changed paths: M tasks/bootstrap_user.yml Log Message: ----------- Merge pull request #6 from nuwang/master Remove bootstrap user from galaxy admin list Commit: 0bc968146425d2e8025a6b90db511ec71faa65e0 https://github.com/galaxyproject/galaxy/commit/0bc968146425d2e8025a6b90db511... Author: nuwan_ag <nuwan.ag@gmail.com> Date: 2015-09-20 (Sun, 20 Sep 2015) Changed paths: M defaults/main.yml M tasks/tools.yml Log Message: ----------- Added setting for ignoring tool errors. Default is no Commit: ca8724e2e522e361b781922184e37d20c76a98f2 https://github.com/galaxyproject/galaxy/commit/ca8724e2e522e361b781922184e37... Author: nuwan_ag <nuwan.ag@gmail.com> Date: 2015-09-20 (Sun, 20 Sep 2015) Changed paths: M tasks/tools.yml Log Message: ----------- Fixed syntax error Commit: bb278077f692b60104b4c71a5864b04819c16c7b https://github.com/galaxyproject/galaxy/commit/bb278077f692b60104b4c71a5864b... Author: nuwan_ag <nuwan.ag@gmail.com> Date: 2015-09-24 (Thu, 24 Sep 2015) Changed paths: M defaults/main.yml M tasks/tools.yml Log Message: ----------- Added support for multiple tool list files. Removed ignore_tool_errors when installing tools Commit: 0f175fda7bc85d5fec136a6bb9102bee0f2326b8 https://github.com/galaxyproject/galaxy/commit/0f175fda7bc85d5fec136a6bb9102... Author: Enis Afgan <afgane@gmail.com> Date: 2015-09-28 (Mon, 28 Sep 2015) Changed paths: M defaults/main.yml M tasks/tools.yml Log Message: ----------- Merge pull request #7 from nuwang/master Added support for multiple tool list files Commit: c259caa75621dadea8280dfa7d06db9df1c122bd https://github.com/galaxyproject/galaxy/commit/c259caa75621dadea8280dfa7d06d... Author: Marius van den Beek <m.vandenbeek@gmail.com> Date: 2015-11-18 (Wed, 18 Nov 2015) Changed paths: M files/install_tool_shed_tools.py Log Message: ----------- Allow specifying tool_panel_section_label. Commit: f4f8f4ef3c901e5716aa3dbe355bf0b2e1ca2dee https://github.com/galaxyproject/galaxy/commit/f4f8f4ef3c901e5716aa3dbe355bf... Author: Martin Cech <cech.marten@gmail.com> Date: 2015-11-18 (Wed, 18 Nov 2015) Changed paths: M files/install_tool_shed_tools.py Log Message: ----------- Merge pull request #8 from mvdbeek/master Allow specifying tool_panel_section_label. Commit: bfbcff5dfd2f7e69418c77cbf66d6679b03e5cb5 https://github.com/galaxyproject/galaxy/commit/bfbcff5dfd2f7e69418c77cbf66d6... Author: Enis Afgan <afgane@gmail.com> Date: 2015-11-20 (Fri, 20 Nov 2015) Changed paths: M files/install_tool_shed_tools.py Log Message: ----------- Integrate tool_panel_section_label from PR #8 into the logic Commit: 5bba9cb3eccf7f84fdef7667116c79ea4cd28d8c https://github.com/galaxyproject/galaxy/commit/5bba9cb3eccf7f84fdef7667116c7... Author: Enis Afgan <afgane@gmail.com> Date: 2015-11-20 (Fri, 20 Nov 2015) Changed paths: M files/install_tool_shed_tools.py Log Message: ----------- Merge branch 'master' of https://github.com/galaxyproject/ansible-tools Commit: 9d3b025e0dc45a82accd8553fd450bf9306f0211 https://github.com/galaxyproject/galaxy/commit/9d3b025e0dc45a82accd8553fd450... Author: Enis Afgan <afgane@gmail.com> Date: 2015-11-24 (Tue, 24 Nov 2015) Changed paths: M files/install_tool_shed_tools.py M files/tool_list.yaml.sample Log Message: ----------- Add docs to the sample file for using tool_panel_section_label; update logging message Commit: 514edd4fdfc4f5255433bf075583c6ef3ad771ae https://github.com/galaxyproject/galaxy/commit/514edd4fdfc4f5255433bf075583c... Author: Fabio Rocha Jimenez Vieira <fabiorjvieira@gmail.com> Date: 2015-12-18 (Fri, 18 Dec 2015) Changed paths: M files/install_tool_shed_tools.py Log Message: ----------- Reactivate data manager options. Commit: fa7b4dc22410c87063184a0fa98006077c380cc3 https://github.com/galaxyproject/galaxy/commit/fa7b4dc22410c87063184a0fa9800... Author: Enis Afgan <afgane@gmail.com> Date: 2015-12-26 (Sat, 26 Dec 2015) Changed paths: M files/install_tool_shed_tools.py Log Message: ----------- Merge pull request #9 from fabiorjvieira/master Reactivate data manager options. Commit: 8eba7171b1f9c0752dd7929d20dc7fde0655057b https://github.com/galaxyproject/galaxy/commit/8eba7171b1f9c0752dd7929d20dc7... Author: Björn Grüning <bjoern@gruenings.eu> Date: 2016-01-02 (Sat, 02 Jan 2016) Changed paths: M files/install_tool_shed_tools.py Log Message: ----------- fallback for already installed tools Commit: 88ebe3d88c4570475e968b204122f79c4c68987c https://github.com/galaxyproject/galaxy/commit/88ebe3d88c4570475e968b204122f... Author: Enis Afgan <afgane@gmail.com> Date: 2016-01-02 (Sat, 02 Jan 2016) Changed paths: M files/install_tool_shed_tools.py Log Message: ----------- Merge pull request #10 from galaxyproject/already_installed fallback for already installed tools Commit: 2e34d84b5a79e5f909f640c78e6853f5f2313ff5 https://github.com/galaxyproject/galaxy/commit/2e34d84b5a79e5f909f640c78e685... Author: Enis Afgan <afgane@gmail.com> Date: 2016-01-02 (Sat, 02 Jan 2016) Changed paths: M files/install_tool_shed_tools.py Log Message: ----------- A couple of minor style changes for PR #10 Commit: 5b2bbf6cd6f88cb2ffaef0db2d6e7c7510391b62 https://github.com/galaxyproject/galaxy/commit/5b2bbf6cd6f88cb2ffaef0db2d6e7... Author: Marius van den Beek <m.vandenbeek@gmail.com> Date: 2016-01-06 (Wed, 06 Jan 2016) Changed paths: M defaults/main.yml M files/install_tool_shed_tools.py M tasks/tools.yml Log Message: ----------- Install tools from tool_list individually Commit: d26cfa4851d5865b048761a0df16ed621ea2b448 https://github.com/galaxyproject/galaxy/commit/d26cfa4851d5865b048761a0df16e... Author: Marius van den Beek <m.vandenbeek@gmail.com> Date: 2016-01-06 (Wed, 06 Jan 2016) Changed paths: M defaults/main.yml M tasks/tools.yml Log Message: ----------- Attempt to discover tool install state Commit: 7328b2034b6bd6c8c0a549cf30fc6d5873f6b5bf https://github.com/galaxyproject/galaxy/commit/7328b2034b6bd6c8c0a549cf30fc6... Author: Enis Afgan <afgane@gmail.com> Date: 2016-01-06 (Wed, 06 Jan 2016) Changed paths: M defaults/main.yml M files/install_tool_shed_tools.py M tasks/tools.yml Log Message: ----------- Merge pull request #11 from mvdbeek/install_individual_tools Install tools from tool_list individually Commit: dbf5183aa7bf633e9cf6ddad2741fbea6046fbd8 https://github.com/galaxyproject/galaxy/commit/dbf5183aa7bf633e9cf6ddad2741f... Author: Enis Afgan <afgane@gmail.com> Date: 2016-01-06 (Wed, 06 Jan 2016) Changed paths: M defaults/main.yml M files/install_tool_shed_tools.py M tasks/tools.yml Log Message: ----------- Add some docs for PR #11 Commit: 809fab5df7a5508ace55bc175a69c99b256ab9e7 https://github.com/galaxyproject/galaxy/commit/809fab5df7a5508ace55bc175a69c... Author: Fabio Rocha Jimenez Vieira <fabiorjvieira@gmail.com> Date: 2016-01-12 (Tue, 12 Jan 2016) Changed paths: M tasks/bootstrap_user.yml M tasks/restart_galaxy.yml Log Message: ----------- Check if galaxy is managed by supervisor and avoid bootstrap procedure to remove the previous admin. Commit: ca01aeea836f128a8cc54f2a7a514062170b7509 https://github.com/galaxyproject/galaxy/commit/ca01aeea836f128a8cc54f2a7a514... Author: Fabio Rocha Jimenez Vieira <fabiorjvieira@gmail.com> Date: 2016-01-12 (Tue, 12 Jan 2016) Changed paths: M tasks/bootstrap_user.yml M tasks/restart_galaxy.yml Log Message: ----------- fix bootstrap user misplaced whens. Commit: 81ad20a35c43cfd97d534e5c952f4e29cab387d7 https://github.com/galaxyproject/galaxy/commit/81ad20a35c43cfd97d534e5c952f4... Author: Fabio Rocha Jimenez Vieira <fabiorjvieira@gmail.com> Date: 2016-01-13 (Wed, 13 Jan 2016) Changed paths: M tasks/bootstrap_user.yml Log Message: ----------- Fixing bootstrap user porcedure (bootstrap_user.yml) when there is already a admin in galaxy config file. Commit: 3d0040e9237e4000289b8d06cb83526deb9d4a3d https://github.com/galaxyproject/galaxy/commit/3d0040e9237e4000289b8d06cb835... Author: Fabio Rocha Jimenez Vieira <fabiorjvieira@gmail.com> Date: 2016-01-14 (Thu, 14 Jan 2016) Changed paths: M tasks/bootstrap_user.yml Log Message: ----------- Bootstrap user procedure fixed (bootstrap_user.yml). It is ok when there is already a admin in galaxy config file. Commit: dee138f1269ce71cc12ac7b346c2afa7505e86ad https://github.com/galaxyproject/galaxy/commit/dee138f1269ce71cc12ac7b346c2a... Author: Enis Afgan <afgane@gmail.com> Date: 2016-01-14 (Thu, 14 Jan 2016) Changed paths: M tasks/bootstrap_user.yml M tasks/restart_galaxy.yml Log Message: ----------- Merge pull request #14 from fabiorjvieira/master Fix "bootstrap user" and "restart galaxy" tasks Commit: be1300a8fbd501a8d985c8bb9b22604a4807c786 https://github.com/galaxyproject/galaxy/commit/be1300a8fbd501a8d985c8bb9b226... Author: mvdbeek <m.vandenbeek@gmail.com> Date: 2016-01-29 (Fri, 29 Jan 2016) Changed paths: M files/install_tool_shed_tools.py Log Message: ----------- Use last item of response to determine if install has finished. Commit: 8ce34d1e0931dd70369d717aabb1057100e41f34 https://github.com/galaxyproject/galaxy/commit/8ce34d1e0931dd70369d717aabb10... Author: Enis Afgan <afgane@gmail.com> Date: 2016-01-29 (Fri, 29 Jan 2016) Changed paths: M files/install_tool_shed_tools.py Log Message: ----------- Merge pull request #16 from ARTbio/wait_for_install Use last item of response to determine if install has finished. Commit: 429fa4e01b9e03b65f5e28e71f0982c2dc10c746 https://github.com/galaxyproject/galaxy/commit/429fa4e01b9e03b65f5e28e71f098... Author: Marius van den Beek <m.vandenbeek@gmail.com> Date: 2016-01-31 (Sun, 31 Jan 2016) Changed paths: M files/install_tool_shed_tools.py Log Message: ----------- Wait for tool installation to finish before timeout. Commit: 15c12fce58f8dbeb449355c9149ea7a565d649b7 https://github.com/galaxyproject/galaxy/commit/15c12fce58f8dbeb449355c9149ea... Author: Enis Afgan <afgane@gmail.com> Date: 2016-01-31 (Sun, 31 Jan 2016) Changed paths: M files/install_tool_shed_tools.py Log Message: ----------- Merge pull request #17 from mvdbeek/timeout Wait for tool installation to finish before timeout. Commit: a96e604b9078a9c7bff7bbea8764d16c6ede0b71 https://github.com/galaxyproject/galaxy/commit/a96e604b9078a9c7bff7bbea8764d... Author: Enis Afgan <afgane@gmail.com> Date: 2016-01-31 (Sun, 31 Jan 2016) Changed paths: M files/install_tool_shed_tools.py Log Message: ----------- Remove unused code; style cleanup Commit: 2dac7b89e1c890a44430d6c217521679cfb3d2eb https://github.com/galaxyproject/galaxy/commit/2dac7b89e1c890a44430d6c217521... Author: mvdbeek <m.vandenbeek@gmail.com> Date: 2016-02-01 (Mon, 01 Feb 2016) Changed paths: M defaults/main.yml A files/install_workflow.py M tasks/main.yml A tasks/workflows.yml Log Message: ----------- Install workflow (for admin user currently) Commit: 9f4767b448395188259c02fbd44fdc2a1335c63d https://github.com/galaxyproject/galaxy/commit/9f4767b448395188259c02fbd44fd... Author: Marius van den Beek <m.vandenbeek@gmail.com> Date: 2016-02-01 (Mon, 01 Feb 2016) Changed paths: M tasks/workflows.yml Log Message: ----------- Workfow path needs to be quoted Commit: 6c075e8e91f231edd787905b6267de2b36ec2f79 https://github.com/galaxyproject/galaxy/commit/6c075e8e91f231edd787905b6267d... Author: Marius van den Beek <m.vandenbeek@gmail.com> Date: 2016-02-01 (Mon, 01 Feb 2016) Changed paths: M defaults/main.yml A files/sample-workflow.ga Log Message: ----------- Add sample workflow Commit: 7eb4129adf3303c572f430b28295c51896a8bcec https://github.com/galaxyproject/galaxy/commit/7eb4129adf3303c572f430b28295c... Author: Marius van den Beek <m.vandenbeek@gmail.com> Date: 2016-02-02 (Tue, 02 Feb 2016) Changed paths: M defaults/main.yml M tasks/main.yml Log Message: ----------- Boolean to control workflow installation, empty list of workflows Commit: dd1444344ae6b26118d3d69d2dc13e1155862e8b https://github.com/galaxyproject/galaxy/commit/dd1444344ae6b26118d3d69d2dc13... Author: Enis Afgan <afgane@gmail.com> Date: 2016-02-03 (Wed, 03 Feb 2016) Changed paths: M defaults/main.yml A files/install_workflow.py A files/sample-workflow.ga M tasks/main.yml A tasks/workflows.yml Log Message: ----------- Merge pull request #18 from ARTbio/install_workflow Install workflow Commit: 9ea6a81fe4bf27de285e81d33d8cfbc40f842f98 https://github.com/galaxyproject/galaxy/commit/9ea6a81fe4bf27de285e81d33d8cf... Author: Cameron Jack <cameron.jack@anu.edu.au> Date: 2016-02-03 (Wed, 03 Feb 2016) Changed paths: M files/install_workflow.py Log Message: ----------- Adds UUID checking to avoid duplicate installs Commit: 27e9c783e3624064505be1e2f650795a5d98d141 https://github.com/galaxyproject/galaxy/commit/27e9c783e3624064505be1e2f6507... Author: Cameron Jack <cameron.jack@anu.edu.au> Date: 2016-02-03 (Wed, 03 Feb 2016) Changed paths: M files/install_workflow.py Log Message: ----------- Adds UUID checking to avoid duplicate workflows Commit: d2f157cc0eb177107e97df6a2d372d7735787960 https://github.com/galaxyproject/galaxy/commit/d2f157cc0eb177107e97df6a2d372... Author: Enis Afgan <afgane@gmail.com> Date: 2016-02-05 (Fri, 05 Feb 2016) Changed paths: M files/install_workflow.py Log Message: ----------- Merge pull request #19 from cameron-jack/master UUID checking to avoid duplicate workflows Commit: eec47f7a6988d4472bc99789fcc7ba894b74c17b https://github.com/galaxyproject/galaxy/commit/eec47f7a6988d4472bc99789fcc7b... Author: Enis Afgan <afgane@gmail.com> Date: 2016-02-05 (Fri, 05 Feb 2016) Changed paths: M files/install_workflow.py Log Message: ----------- Use .get methods when retrieving uuid keys Commit: 90c816bd40a4971dda8bd96d865efb1dee131566 https://github.com/galaxyproject/galaxy/commit/90c816bd40a4971dda8bd96d865ef... Author: Enis Afgan <afgane@gmail.com> Date: 2016-02-05 (Fri, 05 Feb 2016) Changed paths: M files/install_workflow.py Log Message: ----------- Make sure the opened workflow file gets closed after it's been loaded Commit: c2aa72da4180cd6d25b25f8b79730c8fa5f863fd https://github.com/galaxyproject/galaxy/commit/c2aa72da4180cd6d25b25f8b79730... Author: Enis Afgan <afgane@gmail.com> Date: 2016-02-08 (Mon, 08 Feb 2016) Changed paths: M files/manage_bootstrap_user.py Log Message: ----------- Fix logging in the bootstrap user management script Commit: a335ceecfcc3cd633c562ef8381e9ba30e3aceff https://github.com/galaxyproject/galaxy/commit/a335ceecfcc3cd633c562ef8381e9... Author: Enis Afgan <afgane@gmail.com> Date: 2016-02-08 (Mon, 08 Feb 2016) Changed paths: M defaults/main.yml M tasks/bootstrap_user.yml Log Message: ----------- Explicitly set the bootstrap user username Commit: 15e9c0925d4e79f82e553205b170855066094df6 https://github.com/galaxyproject/galaxy/commit/15e9c0925d4e79f82e553205b1708... Author: Enis Afgan <afgane@gmail.com> Date: 2016-02-10 (Wed, 10 Feb 2016) Changed paths: M files/manage_bootstrap_user.py Log Message: ----------- Minor bootstrap user script cleanup Commit: 836b5240653d1cfc9ea39e587841b2f12270c2b2 https://github.com/galaxyproject/galaxy/commit/836b5240653d1cfc9ea39e587841b... Author: Marius van den Beek <m.vandenbeek@gmail.com> Date: 2016-03-04 (Fri, 04 Mar 2016) Changed paths: M files/install_tool_shed_tools.py Log Message: ----------- Workaround missing logging functionality in python2.6 Compare: https://github.com/galaxyproject/galaxy/compare/49d5222beb96^...836b5240653d