1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/changeset/fb67f73df9a2/ changeset: fb67f73df9a2 user: inithello date: 2012-06-26 21:18:19 summary: Also added missing publicbuilds.txt affected #: 2 files
diff -r e112508794a8585e96bc1ba15c2be1cce421393d -r fb67f73df9a24cb9eba278e7c62ba996fa11a6be .hgignore --- a/.hgignore +++ b/.hgignore @@ -51,6 +51,7 @@ tool-data/shared/rviewer/rviewer_build_sites.txt tool-data/shared/ucsc/builds.txt tool-data/shared/ensembl/builds.txt +tool-data/shared/ucsc/publicbuilds.txt tool-data/*.loc tool-data/genome/*
diff -r e112508794a8585e96bc1ba15c2be1cce421393d -r fb67f73df9a24cb9eba278e7c62ba996fa11a6be tool-data/shared/ucsc/publicbuilds.txt --- /dev/null +++ b/tool-data/shared/ucsc/publicbuilds.txt @@ -0,0 +1,96 @@ +#Harvested from http://genome.cse.ucsc.edu/cgi-bin/das/dsn +? unspecified (?) +hg19 Human Feb. 2009 (GRCh37/hg19) (hg19) +hg18 Human Mar. 2006 (NCBI36/hg18) (hg18) +hg17 Human May 2004 (NCBI35/hg17) (hg17) +panTro3 Chimp Oct. 2010 (CGSC 2.1.3/panTro3) (panTro3) +panTro2 Chimp Mar. 2006 (CGSC 2.1/panTro2) (panTro2) +gorGor3 Gorilla May 2011 (gorGor3.1/gorGor3) (gorGor3) +ponAbe2 Orangutan July 2007 (WUGSC 2.0.2/ponAbe2) (ponAbe2) +nomLeu1 Gibbon Jan. 2010 (GGSC Nleu1.0/nomLeu1) (nomLeu1) +rheMac2 Rhesus Jan. 2006 (MGSC Merged 1.0/rheMac2) (rheMac2) +calJac3 Marmoset March 2009 (WUGSC 3.2/calJac3) (calJac3) +calJac1 Marmoset June 2007 (WUGSC 2.0.2/calJac1) (calJac1) +mm10 Mouse Dec. 2011 (GRCm38/mm10) (mm10) +mm9 Mouse July 2007 (NCBI37/mm9) (mm9) +mm8 Mouse Feb. 2006 (NCBI36/mm8) (mm8) +rn5 Rat Mar. 2012 (RGSC 5.0/rn5) (rn5) +rn4 Rat Nov. 2004 (Baylor 3.4/rn4) (rn4) +hetGla1 Naked mole-rat Jul. 2011 (BGI HetGla_1.0/hetGla1) (hetGla1) +cavPor3 Guinea pig Feb. 2008 (Broad/cavPor3) (cavPor3) +oryCun2 Rabbit Apr. 2009 (Broad/oryCun2) (oryCun2) +susScr2 Pig Nov. 2009 (SGSC Sscrofa9.2/susScr2) (susScr2) +oviAri1 Sheep Feb. 2010 (ISGC Ovis_aries_1.0/oviAri1) (oviAri1) +bosTau7 Cow Oct. 2011 (Baylor Btau_4.6.1/bosTau7) (bosTau7) +bosTau6 Cow Nov. 2009 (Bos_taurus_UMD_3.1/bosTau6) (bosTau6) +bosTau4 Cow Oct. 2007 (Baylor 4.0/bosTau4) (bosTau4) +equCab2 Horse Sep. 2007 (Broad/equCab2) (equCab2) +equCab1 Horse Jan. 2007 (Broad/equCab1) (equCab1) +felCat4 Cat Dec. 2008 (NHGRI/GTB V17e/felCat4) (felCat4) +felCat3 Cat Mar. 2006 (Broad/felCat3) (felCat3) +canFam3 Dog Sep. 2011 (Broad CanFam3.1/canFam3) (canFam3) +canFam2 Dog May 2005 (Broad/canFam2) (canFam2) +ailMel1 Panda Dec. 2009 (BGI-Shenzhen 1.0/ailMel1) (ailMel1) +myoLuc2 Microbat Jul. 2010 (Broad Institute Myoluc2.0/myoLuc2) (myoLuc2) +loxAfr3 Elephant Jul. 2009 (Broad/loxAfr3) (loxAfr3) +monDom5 Opossum Oct. 2006 (Broad/monDom5) (monDom5) +monDom4 Opossum Jan. 2006 (Broad/monDom4) (monDom4) +macEug2 Wallaby Sep. 2009 (TWGS Meug_1.1/macEug2) (macEug2) +ornAna1 Platypus Mar. 2007 (WUGSC 5.0.1/ornAna1) (ornAna1) +galGal4 Chicken Nov. 2011 (ICGSC Gallus_gallus-4.0/galGal4) (galGal4) +galGal3 Chicken May 2006 (WUGSC 2.1/galGal3) (galGal3) +melGal1 Turkey Dec. 2009 (TGC Turkey_2.01/melGal1) (melGal1) +taeGut1 Zebra finch Jul. 2008 (WUGSC 3.2.4/taeGut1) (taeGut1) +anoCar2 Lizard May 2010 (Broad AnoCar2.0/anoCar2) (anoCar2) +anoCar1 Lizard Feb. 2007 (Broad/anoCar1) (anoCar1) +chrPic1 Painted turtle Dec. 2011 (v3.0.1/chrPic1) (chrPic1) +xenTro3 X. tropicalis Nov. 2009 (JGI 4.2/xenTro3) (xenTro3) +xenTro2 X. tropicalis Aug. 2005 (JGI 4.1/xenTro2) (xenTro2) +danRer7 Zebrafish Jul. 2010 (Zv9/danRer7) (danRer7) +danRer6 Zebrafish Dec. 2008 (Zv8/danRer6) (danRer6) +tetNig2 Tetraodon Mar. 2007 (Genoscope 8.0/tetNig2) (tetNig2) +tetNig1 Tetraodon Feb. 2004 (Genoscope 7/tetNig1) (tetNig1) +fr3 Fugu Oct. 2011 (FUGU5/fr3) (fr3) +fr2 Fugu Oct. 2004 (JGI 4.0/fr2) (fr2) +gasAcu1 Stickleback Feb. 2006 (Broad/gasAcu1) (gasAcu1) +oryLat2 Medaka Oct. 2005 (NIG/UT MEDAKA1/oryLat2) (oryLat2) +petMar1 Lamprey Mar. 2007 (WUGSC 3.0/petMar1) (petMar1) +aplCal1 Sea hare Sept. 2008 (Broad 2.0/aplCal1) (aplCal1) +braFlo1 Lancelet Mar. 2006 (JGI 1.0/braFlo1) (braFlo1) +ci2 C. intestinalis Mar. 2005 (JGI 2.1/ci2) (ci2) +ci1 C. intestinalis Dec. 2002 (JGI 1.0/ci1) (ci1) +strPur2 S. purpuratus Sep. 2006 (Baylor 2.1/strPur2) (strPur2) +strPur1 S. purpuratus Apr. 2005 (Baylor 1.1/strPur1) (strPur1) +ce10 C. elegans Oct. 2010 (WS220/ce10) (ce10) +ce6 C. elegans May 2008 (WS190/ce6) (ce6) +ce4 C. elegans Jan. 2007 (WS170/ce4) (ce4) +caePb2 C. brenneri Feb. 2008 (WUGSC 6.0.1/caePb2) (caePb2) +caePb1 C. brenneri Jan. 2007 (WUGSC 4.0/caePb1) (caePb1) +cb3 C. briggsae Jan. 2007 (WUGSC 1.0/cb3) (cb3) +cb1 C. briggsae July 2002 (WormBase cb25.agp8/cb1) (cb1) +caeRem3 C. remanei May 2007 (WUGSC 15.0.1/caeRem3) (caeRem3) +caeRem2 C. remanei Mar. 2006 (WUGSC 1.0/caeRem2) (caeRem2) +caeJap1 C. japonica Mar. 2008 (WUGSC 3.0.2/caeJap1) (caeJap1) +priPac1 P. pacificus Feb. 2007 (WUGSC 5.0/priPac1) (priPac1) +dm3 D. melanogaster Apr. 2006 (BDGP R5/dm3) (dm3) +dm2 D. melanogaster Apr. 2004 (BDGP R4/dm2) (dm2) +droSim1 D. simulans Apr. 2005 (WUGSC mosaic 1.0/droSim1) (droSim1) +droSec1 D. sechellia Oct. 2005 (Broad/droSec1) (droSec1) +droYak2 D. yakuba Nov. 2005 (WUGSC 7.1/droYak2) (droYak2) +droYak1 D. yakuba Apr. 2004 (WUGSC 1.0/droYak1) (droYak1) +droEre1 D. erecta Aug. 2005 (Agencourt prelim/droEre1) (droEre1) +droAna2 D. ananassae Aug. 2005 (Agencourt prelim/droAna2) (droAna2) +droAna1 D. ananassae July 2004 (TIGR/droAna1) (droAna1) +dp3 D. pseudoobscura Nov. 2004 (FlyBase 1.03/dp3) (dp3) +dp2 D. pseudoobscura Aug. 2003 (Baylor freeze1/dp2) (dp2) +droPer1 D. persimilis Oct. 2005 (Broad/droPer1) (droPer1) +droVir2 D. virilis Aug. 2005 (Agencourt prelim/droVir2) (droVir2) +droVir1 D. virilis July 2004 (Agencourt prelim/droVir1) (droVir1) +droMoj2 D. mojavensis Aug. 2005 (Agencourt prelim/droMoj2) (droMoj2) +droMoj1 D. mojavensis Aug. 2004 (Agencourt prelim/droMoj1) (droMoj1) +droGri1 D. grimshawi Aug. 2005 (Agencourt prelim/droGri1) (droGri1) +anoGam1 A. gambiae Feb. 2003 (IAGEC MOZ2/anoGam1) (anoGam1) +apiMel2 A. mellifera Jan. 2005 (Baylor 2.0/apiMel2) (apiMel2) +apiMel1 A. mellifera July 2004 (Baylor 1.2/apiMel1) (apiMel1) +sacCer3 S. cerevisiae Apr. 2011 (SacCer_Apr2011/sacCer3) (sacCer3) +sacCer2 S. cerevisiae June 2008 (SGD/sacCer2) (sacCer2)
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