1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/changeset/f87dff286e86/ changeset: f87dff286e86 user: natefoo date: 2012-02-03 18:22:16 summary: Use cluster_files_directory for drmaa job template. affected #: 1 file
diff -r 0b7ae34da7fbc3a66f21eac243af22965c73e7cc -r f87dff286e86368fb33032ac567a5c9368dc990b lib/galaxy/jobs/runners/drmaa.py --- a/lib/galaxy/jobs/runners/drmaa.py +++ b/lib/galaxy/jobs/runners/drmaa.py @@ -169,7 +169,7 @@ ofile = "%s.drmout" % os.path.join(os.getcwd(), job_wrapper.working_directory, job_wrapper.get_id_tag()) efile = "%s.drmerr" % os.path.join(os.getcwd(), job_wrapper.working_directory, job_wrapper.get_id_tag()) jt = self.ds.createJobTemplate() - jt.remoteCommand = "%s/database/pbs/galaxy_%s.sh" % (os.getcwd(), job_wrapper.get_id_tag()) + jt.remoteCommand = "%s/galaxy_%s.sh" % (self.app.config.cluster_files_directory, job_wrapper.get_id_tag()) jt.outputPath = ":%s" % ofile jt.errorPath = ":%s" % efile native_spec = self.get_native_spec( runner_url )
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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