Branch: refs/heads/master Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: ed83ee9d3c5d3062441fb28cf02cf50fa585f4c0 https://github.com/galaxyproject/usegalaxy-playbook/commit/ed83ee9d3c5d30624... Author: Nate Coraor nate@bx.psu.edu Date: 2017-04-06 (Thu, 06 Apr 2017)
Changed paths: M common_roles M roles/galaxyprojectdotorg.galaxy/README.md M roles/galaxyprojectdotorg.galaxy/defaults/main.yml M roles/galaxyprojectdotorg.galaxy/files/makepyc.py M roles/galaxyprojectdotorg.galaxy/handlers/main.yml M roles/galaxyprojectdotorg.galaxy/meta/.galaxy_install_info M roles/galaxyprojectdotorg.galaxy/tasks/clone.yml M roles/galaxyprojectdotorg.galaxy/tasks/database.yml M roles/galaxyprojectdotorg.galaxy/tasks/dependencies.yml M roles/galaxyprojectdotorg.galaxy/tasks/download.yml M roles/galaxyprojectdotorg.galaxy/tasks/main.yml M roles/galaxyprojectdotorg.galaxy/tasks/mutable_setup.yml M roles/galaxyprojectdotorg.galaxy/tasks/static_setup.yml M roles/galaxyprojectdotorg.galaxy/tasks/virtualenv.yml M roles/galaxyprojectdotorg.nginx/README.md M roles/galaxyprojectdotorg.nginx/meta/.galaxy_install_info M roles/galaxyprojectdotorg.nginx/meta/main.yml M roles/galaxyprojectdotorg.nginx/tasks/main.yml A roles/galaxyprojectdotorg.nginx/tasks/pkgin.yml M roles/galaxyprojectdotorg.nginx/templates/epel-nginx.conf.j2 A roles/galaxyprojectdotorg.nginx/templates/pkgin-nginx.conf.j2 A roles/galaxyprojectdotorg.nginx/vars/pkgin.yml M roles/galaxyprojectdotorg.postgresql/files/get_repo_rpm_release.py M roles/galaxyprojectdotorg.postgresql/meta/.galaxy_install_info M roles/galaxyprojectdotorg.postgresql/tasks/main.yml M roles/galaxyprojectdotorg.postgresql/tasks/redhat.yml M roles/galaxyprojectdotorg.postgresql/templates/archive_wal.sh.j2 M roles/galaxyprojectdotorg.postgresql/templates/backup_working_wal.sh.j2 M roles/galaxyprojectdotorg.postgresql/templates/scheduled_backup.sh.j2 M roles/natefoo.postgresql_objects/README.md M roles/natefoo.postgresql_objects/meta/.galaxy_install_info M roles/natefoo.postgresql_objects/tasks/main.yml
Log Message: ----------- Update roles
Commit: 60df6e1d5c7879155576d7b98b880c9f74be94e6 https://github.com/galaxyproject/usegalaxy-playbook/commit/60df6e1d5c7879155... Author: Nate Coraor nate@bx.psu.edu Date: 2017-04-07 (Fri, 07 Apr 2017)
Changed paths: M production/files/interactive_environments/plugins/bam_iobio/config/bam_iobio.ini.sample M production/files/interactive_environments/plugins/bam_iobio/static/js/bam_iobio.js M production/files/interactive_environments/plugins/bam_iobio/templates/bam_iobio.mako M production/files/interactive_environments/plugins/common/templates/ie.mako R production/files/interactive_environments/plugins/ethercalc/config/allowed_images.yml.sample R production/files/interactive_environments/plugins/ethercalc/config/ethercalc.ini.sample R production/files/interactive_environments/plugins/ethercalc/config/ethercalc.xml R production/files/interactive_environments/plugins/ethercalc/static/js/ethercalc.js R production/files/interactive_environments/plugins/ethercalc/templates/ethercalc.mako M production/files/interactive_environments/plugins/jupyter/config/allowed_images.yml.sample M production/files/interactive_environments/plugins/jupyter/config/jupyter.ini.sample M production/files/interactive_environments/plugins/jupyter/config/jupyter.xml M production/files/interactive_environments/plugins/jupyter/static/js/jupyter.js M production/files/interactive_environments/plugins/jupyter/templates/jupyter.mako M production/files/interactive_environments/plugins/neo/config/neo.ini.sample M production/files/interactive_environments/plugins/neo/static/js/neo.js M production/files/interactive_environments/plugins/neo/templates/neo.mako M production/files/interactive_environments/plugins/phinch/config/phinch.ini.sample M production/files/interactive_environments/plugins/phinch/static/js/phinch.js M production/files/interactive_environments/plugins/phinch/templates/phinch.mako M production/files/interactive_environments/plugins/rstudio/config/rstudio.ini.sample M production/files/interactive_environments/plugins/rstudio/static/js/rstudio.js M production/files/interactive_environments/plugins/rstudio/templates/rstudio.mako M production/files/interactive_environments/proxy/lib/mapper.js M roles/galaxyprojectdotorg.interactive_environments/meta/.galaxy_install_info M roles/galaxyprojectdotorg.interactive_environments/tasks/extract_component.yml M roles/galaxyprojectdotorg.interactive_environments/tasks/synchronize_components.yml
Log Message: ----------- Merge branch 'master' of github.com:/galaxyproject/usegalaxy-playbook into reorg
Commit: bad32b46a7af10c27f6e6889d10db1c58b8239c1 https://github.com/galaxyproject/usegalaxy-playbook/commit/bad32b46a7af10c27... Author: Nate Coraor nate@bx.psu.edu Date: 2017-04-12 (Wed, 12 Apr 2017)
Changed paths: M README.md M ansible.cfg R common/host_vars/galaxy01.tacc.utexas.edu.yml R common/host_vars/galaxy05.tacc.utexas.edu.yml R common/host_vars/radegast.galaxyproject.org.yml M common/inventory M common_roles A env/common/_inc_restart.yml A env/common/_inc_snapshot.yml A env/common/_inc_static.yml A env/common/config.yml A env/common/files/galaxy/config/disposable_email_blacklist.conf A env/common/files/galaxy/config/pulsar_jetstream_actions.yml A env/common/files/galaxy/dynamic_rules/bridges_select.py A env/common/files/galaxy/dynamic_rules/multi_dynamic_walltime.py A env/common/files/galaxy/dynamic_rules/nvc_dynamic_memory.py A env/common/files/galaxy/dynamic_rules/reserved.py A env/common/files/galaxy/error/413/index.html A env/common/files/galaxy/error/502/index.shtml A env/common/files/galaxy/error/content_bg.png A env/common/files/galaxy/error/error_message_icon.png A env/common/files/galaxy/error/masthead_bg.png A env/common/files/galaxy/static/terms.html A 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env/common/files/ssl/usegalaxy.org_cert.pem A env/common/files/ssl/wildcard_cert.pem A env/common/group_vars/sslservers/vars.yml A env/common/group_vars/sslservers/vault.yml A env/common/group_vars/toolsheddbservers.yml A env/common/group_vars/toolshedservers/common_vars.yml A env/common/group_vars/toolshedservers/common_vault.yml A env/common/group_vars/toolshedwebservers.yml A env/common/pulsar.yml A env/common/restart.yml A env/common/snapshot.yml A env/common/stack.yml A env/common/static.yml A env/common/templates/galaxy/config/reports.ini.j2 A env/common/templates/galaxy/static/welcome.html.j2 A env/common/templates/nginx/toolshed.j2 A env/common/templates/supervisor/galaxy.j2 A env/common/templates/supervisor/galaxy_datamanager.j2 A env/common/templates/supervisor/galaxy_gie_proxy.j2 A env/common/templates/supervisor/galaxy_group.j2 A env/common/templates/supervisor/galaxy_handler.j2 A env/common/templates/supervisor/galaxy_impersonate.j2 A env/common/templates/supervisor/galaxy_reports.j2 A env/common/templates/supervisor/toolshed.j2 A env/common/update.yml A env/common/update_shed.yml A env/test/_inc_config_post_tasks.yml A env/test/_inc_restart.yml A env/test/_inc_snapshot.yml A env/test/_inc_static.yml A env/test/config.yml A env/test/files/galaxy/config/builds.txt A env/test/files/galaxy/config/data_manager_conf.xml A env/test/files/galaxy/config/disposable_email_blacklist.conf A env/test/files/galaxy/config/job_metrics_conf.xml A env/test/files/galaxy/config/job_resource_params_conf.xml A env/test/files/galaxy/config/nagios_tool_conf.xml A env/test/files/galaxy/config/object_store_conf.xml A env/test/files/galaxy/config/pulsar_jetstream.yml A env/test/files/galaxy/config/pulsar_jetstream_actions.yml A env/test/files/galaxy/config/pulsar_stampede_actions.yml A env/test/files/galaxy/config/tool_conf.xml A env/test/files/galaxy/config/tool_data_table_conf.xml A env/test/files/galaxy/config/tool_sheds_conf.xml A 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env/test/files/galaxy/var/migrated_tools_conf.xml A env/test/files/galaxy/var/shed_data_manager_conf.xml A env/test/files/galaxy/var/shed_tool_conf.xml A env/test/files/galaxy/var/shed_tool_data_table_conf.xml A env/test/files/interactive_environments/plugins/.ansible_ie_role_current_version A env/test/files/interactive_environments/plugins/bam_iobio/config/bam_iobio.ini.sample A env/test/files/interactive_environments/plugins/bam_iobio/config/bam_iobio.xml A env/test/files/interactive_environments/plugins/bam_iobio/static/js/bam_iobio.js A env/test/files/interactive_environments/plugins/bam_iobio/templates/bam_iobio.mako A env/test/files/interactive_environments/plugins/common/templates/ie.mako A env/test/files/interactive_environments/plugins/ethercalc/config/ethercalc.ini.sample A env/test/files/interactive_environments/plugins/ethercalc/config/ethercalc.xml A env/test/files/interactive_environments/plugins/ethercalc/static/js/ethercalc.js A 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env/test/group_vars/galaxyswarmmanagers/vars.yml A env/test/group_vars/galaxyswarmmanagers/vault.yml A env/test/group_vars/galaxywebservers.yml A env/test/group_vars/pulsarservers/vars.yml A env/test/group_vars/pulsarservers/vault.yml A env/test/group_vars/sslservers A env/test/group_vars/supervisorservers/vars.yml A env/test/group_vars/supervisorservers/vault.yml A env/test/group_vars/webservers/vars.yml A env/test/group_vars/webservers/vault.yml A env/test/host_vars/br005.bridges.psc.edu.yml A env/test/host_vars/galaxy07.tacc.utexas.edu.yml A env/test/host_vars/jetstream-iu0.galaxyproject.org.yml A env/test/host_vars/jetstream-tacc0.galaxyproject.org.yml A env/test/host_vars/login5.stampede.tacc.utexas.edu.yml A env/test/inventory A env/test/inventory.static A env/test/pulsar.yml A env/test/restart.yml A env/test/snapshot.yml A env/test/stack.yml A env/test/static.yml A env/test/templates/galaxy/config/build_sites.yml.j2 A env/test/templates/galaxy/config/galaxy.ini.j2 A env/test/templates/galaxy/config/job_conf.xml.j2 A env/test/templates/galaxy/config/reports.ini.j2 A env/test/templates/galaxy/config/uwsgi.ini.j2 A env/test/templates/galaxy/static A env/test/templates/nginx/galaxy_test.j2 A env/test/templates/nginx/tacc_protected.j2 A env/test/templates/supervisor A env/test/update.yml A env/testtoolshed/files/ssl A env/testtoolshed/group_vars/sslservers A env/testtoolshed/group_vars/toolsheddbservers.yml A env/testtoolshed/group_vars/toolshedservers/common_vars.yml A env/testtoolshed/group_vars/toolshedservers/common_vault.yml A env/testtoolshed/group_vars/toolshedservers/vars.yml A env/testtoolshed/group_vars/toolshedservers/vault.yml A env/testtoolshed/group_vars/toolshedwebservers.yml A env/testtoolshed/inventory A env/testtoolshed/stack.yml A env/testtoolshed/templates/nginx/testtoolshed.j2 A env/testtoolshed/templates/supervisor/testtoolshed.j2 A env/testtoolshed/update.yml R files/galaxy/test.galaxyproject.org/config/builds.txt R files/galaxy/test.galaxyproject.org/config/data_manager_conf.xml R files/galaxy/test.galaxyproject.org/config/disposable_email_blacklist.conf R files/galaxy/test.galaxyproject.org/config/job_metrics_conf.xml R files/galaxy/test.galaxyproject.org/config/job_resource_params_conf.xml R files/galaxy/test.galaxyproject.org/config/nagios_tool_conf.xml R files/galaxy/test.galaxyproject.org/config/object_store_conf.xml R files/galaxy/test.galaxyproject.org/config/pulsar_jetstream.yml R files/galaxy/test.galaxyproject.org/config/pulsar_jetstream_actions.yml R files/galaxy/test.galaxyproject.org/config/pulsar_stampede_actions.yml R files/galaxy/test.galaxyproject.org/config/tool_conf.xml R files/galaxy/test.galaxyproject.org/config/tool_data_table_conf.xml R files/galaxy/test.galaxyproject.org/config/tool_sheds_conf.xml R files/galaxy/test.galaxyproject.org/config/ucsc_build_sites.txt R files/galaxy/test.galaxyproject.org/dynamic_rules/bridges_select.py R files/galaxy/test.galaxyproject.org/dynamic_rules/jetstream.py R files/galaxy/test.galaxyproject.org/dynamic_rules/multi_dynamic_walltime.py R files/galaxy/test.galaxyproject.org/dynamic_rules/nvc_dynamic_memory.py R files/galaxy/test.galaxyproject.org/dynamic_rules/reserved.py R files/galaxy/test.galaxyproject.org/dynamic_rules/single_dynamic_memory.py R files/galaxy/test.galaxyproject.org/error R files/galaxy/test.galaxyproject.org/nagios/echo_test_bridges.xml R files/galaxy/test.galaxyproject.org/nagios/echo_test_cluster.xml R files/galaxy/test.galaxyproject.org/nagios/echo_test_handler0.xml R files/galaxy/test.galaxyproject.org/nagios/echo_test_handler1.xml R files/galaxy/test.galaxyproject.org/nagios/echo_test_jetstream_iu.xml R files/galaxy/test.galaxyproject.org/nagios/echo_test_jetstream_tacc.xml R files/galaxy/test.galaxyproject.org/nagios/echo_test_stampede.xml R files/galaxy/test.galaxyproject.org/static R files/galaxy/test.galaxyproject.org/tool_list.yaml R 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roles/galaxyprojectdotorg.galaxy/meta/.galaxy_install_info A roles/galaxyprojectdotorg.galaxy/tasks/errordocs.yml M roles/galaxyprojectdotorg.galaxy/tasks/main.yml A roles/galaxyprojectdotorg.galaxy/templates/errordocs/413/index.html.j2 A roles/galaxyprojectdotorg.galaxy/templates/errordocs/502/index.shtml.j2 A roles/galaxyprojectdotorg.galaxy_toolshed/README.md M roles/galaxyprojectdotorg.galaxy_toolshed/defaults/main.yml M roles/galaxyprojectdotorg.galaxy_toolshed/handlers/main.yml A roles/galaxyprojectdotorg.galaxy_toolshed/meta/.galaxy_install_info A roles/galaxyprojectdotorg.galaxy_toolshed/meta/main.yml M roles/galaxyprojectdotorg.galaxy_toolshed/tasks/database.yml M roles/galaxyprojectdotorg.galaxy_toolshed/tasks/main.yml M roles/galaxyprojectdotorg.galaxy_toolshed/tasks/static_setup.yml A roles/galaxyprojectdotorg.galaxy_toolshed/templates/user_info.xml.j2 M roles/galaxyprojectdotorg.postgresql/defaults/main.yml M roles/galaxyprojectdotorg.postgresql/meta/.galaxy_install_info M roles/galaxyprojectdotorg.postgresql/templates/archive_wal.sh.j2 A roles/galaxyprojectdotorg.proftpd/.travis.yml A roles/galaxyprojectdotorg.proftpd/README.md A roles/galaxyprojectdotorg.proftpd/defaults/main.yml A roles/galaxyprojectdotorg.proftpd/handlers/main.yml A roles/galaxyprojectdotorg.proftpd/meta/main.yml A roles/galaxyprojectdotorg.proftpd/tasks/debian.yml A roles/galaxyprojectdotorg.proftpd/tasks/galaxy_auth.yml A roles/galaxyprojectdotorg.proftpd/tasks/main.yml A roles/galaxyprojectdotorg.proftpd/tasks/redhat.yml A roles/galaxyprojectdotorg.proftpd/tasks/tls.yml A roles/galaxyprojectdotorg.proftpd/templates/galaxy_auth.conf.j2 A roles/galaxyprojectdotorg.proftpd/templates/server.conf.j2 A roles/galaxyprojectdotorg.proftpd/templates/tls.conf.j2 A roles/galaxyprojectdotorg.proftpd/tests/inventory A roles/galaxyprojectdotorg.proftpd/tests/test.yml A roles/galaxyprojectdotorg.proftpd/vars/debian.yml A roles/galaxyprojectdotorg.proftpd/vars/main.yml A roles/galaxyprojectdotorg.proftpd/vars/redhat.yml M roles/usegalaxy/tasks/main.yml A roles/usegalaxy/templates/galaxyctl.j2 A roles/usegalaxy/templates/supervisorctl.j2 A roles/usegalaxy/templates/supervisord.conf.j2 M roles/usegalaxy_admin/tasks/main.yml A roles/usegalaxy_cvmfs/tasks/main.yml A roles/usegalaxy_cvmfs/tasks/snapshot.yml A roles/usegalaxy_cvmfs/tasks/update.yml A roles/usegalaxy_cvmfs/tasks/wipecache.yml M roles/usegalaxy_privileged/tasks/main.yml M roles/usegalaxy_static/tasks/main.yml R stage/files/interactive_environments/plugins/.ansible_ie_role_current_version R stage/files/interactive_environments/plugins/bam_iobio/config/bam_iobio.ini.sample R stage/files/interactive_environments/plugins/bam_iobio/config/bam_iobio.xml R stage/files/interactive_environments/plugins/bam_iobio/static/js/bam_iobio.js R stage/files/interactive_environments/plugins/bam_iobio/templates/bam_iobio.mako R stage/files/interactive_environments/plugins/common/templates/ie.mako R stage/files/interactive_environments/plugins/ethercalc/config/ethercalc.ini.sample R stage/files/interactive_environments/plugins/ethercalc/config/ethercalc.xml R stage/files/interactive_environments/plugins/ethercalc/static/js/ethercalc.js R stage/files/interactive_environments/plugins/ethercalc/templates/ethercalc.mako R stage/files/interactive_environments/plugins/interactive_environments.dtd R stage/files/interactive_environments/plugins/jupyter/config/allowed_images.yml.sample R stage/files/interactive_environments/plugins/jupyter/config/jupyter.ini.sample R stage/files/interactive_environments/plugins/jupyter/config/jupyter.xml R stage/files/interactive_environments/plugins/jupyter/static/js/jupyter.js R stage/files/interactive_environments/plugins/jupyter/templates/jupyter.mako R stage/files/interactive_environments/plugins/neo/config/allowed_images.yml.sample R stage/files/interactive_environments/plugins/neo/config/neo.ini.sample R stage/files/interactive_environments/plugins/neo/config/neo.xml R stage/files/interactive_environments/plugins/neo/static/js/neo.js R stage/files/interactive_environments/plugins/neo/templates/neo.mako R stage/files/interactive_environments/plugins/phinch/config/phinch.ini.sample R stage/files/interactive_environments/plugins/phinch/config/phinch.xml R stage/files/interactive_environments/plugins/phinch/static/js/phinch.js R stage/files/interactive_environments/plugins/phinch/templates/phinch.mako R stage/files/interactive_environments/plugins/rstudio/config/allowed_images.yml.sample R stage/files/interactive_environments/plugins/rstudio/config/rstudio.ini.sample R stage/files/interactive_environments/plugins/rstudio/config/rstudio.xml R stage/files/interactive_environments/plugins/rstudio/static/js/crypto/base64.js R stage/files/interactive_environments/plugins/rstudio/static/js/crypto/jsbn.js R stage/files/interactive_environments/plugins/rstudio/static/js/crypto/prng4.js R 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stage/files/interactive_environments/plugins/rstudio/static/js/crypto/wu/prng4.js R stage/files/interactive_environments/plugins/rstudio/static/js/crypto/wu/rng.js R stage/files/interactive_environments/plugins/rstudio/static/js/crypto/wu/rsa.js R stage/files/interactive_environments/plugins/rstudio/static/js/rstudio.js R stage/files/interactive_environments/plugins/rstudio/templates/rstudio.mako R stage/files/interactive_environments/proxy/.ansible_ie_role_current_version R stage/files/interactive_environments/proxy/Dockerfile R stage/files/interactive_environments/proxy/README.md R stage/files/interactive_environments/proxy/lib/main.js R stage/files/interactive_environments/proxy/lib/mapper.js R stage/files/interactive_environments/proxy/lib/proxy.js R stage/files/interactive_environments/proxy/package.json R stage/galaxy_version.yml R stage/group_vars/all.yml R stage/group_vars/galaxydbservers.yml R stage/group_vars/galaxyservers.yml R stage/group_vars/pulsarservers.yml R stage/group_vars/toolsheddbservers.yml R stage/group_vars/toolshedservers.yml R stage/host_vars/br005.bridges.psc.edu.yml R stage/host_vars/galaxy01.tacc.utexas.edu.yml R stage/host_vars/jetstream-iu0.galaxyproject.org.yml R stage/host_vars/jetstream-tacc0.galaxyproject.org.yml R stage/host_vars/login5.stampede.tacc.utexas.edu.yml R stage/secret_vars/galaxydbservers.yml R stage/secret_vars/galaxyservers.yml R stage/secret_vars/pulsarservers.yml R templates/galaxy/test.galaxyproject.org/config/build_sites.yml.j2 R templates/galaxy/test.galaxyproject.org/config/job_conf.xml.j2 R templates/galaxy/test.galaxyproject.org/config/reports.ini.j2 R templates/galaxy/test.galaxyproject.org/config/uwsgi.ini.j2 R templates/galaxy/test.galaxyproject.org/static R templates/nginx/galaxy_main_installer.j2 R templates/nginx/galaxy_test.j2 R templates/nginx/tacc_protected.j2 R templates/nginx/testtoolshed.j2 R templates/nginx/toolshed.j2 R templates/supervisor/galaxy_datamanager.j2 R templates/supervisor/galaxy_installer.j2 R templates/supervisor/testtoolshed.j2 R templates/supervisor/toolshed.j2 R toolshed.yml
Log Message: ----------- Reorganize and update playbook for complete redeployment of Test on to a new VM. The new VM was deployed entirely with infrastructure-playbook and this playbook.
The Test Tool Shed was also reorganized due to the removal of `stage`.
Coming soon: Main
Commit: be93b172eb3ea3a4aa41e8a16b7027799a5d8533 https://github.com/galaxyproject/usegalaxy-playbook/commit/be93b172eb3ea3a4a... Author: Nate Coraor nate@bx.psu.edu Date: 2017-04-12 (Wed, 12 Apr 2017)
Changed paths: M env/test/files/galaxy/galaxy_version.yml
Log Message: ----------- Update Test
Commit: 6cca389e2fa650cb6479eead5b6866b6f3f0622d https://github.com/galaxyproject/usegalaxy-playbook/commit/6cca389e2fa650cb6... Author: Nate Coraor nate@bx.psu.edu Date: 2017-04-17 (Mon, 17 Apr 2017)
Changed paths: M env/common/config.yml M env/common/templates/supervisor/galaxy.j2 M env/common/update.yml M env/test/files/galaxy/var/integrated_tool_panel.xml M env/test/files/interactive_environments/plugins/.ansible_ie_role_current_version A env/test/files/interactive_environments/plugins/ethercalc/config/allowed_images.yml.sample M env/test/files/interactive_environments/plugins/ethercalc/config/ethercalc.ini.sample M env/test/files/interactive_environments/proxy/.ansible_ie_role_current_version M env/test/group_vars/galaxyservers/vars.yml M roles/galaxyprojectdotorg.galaxy/README.md M roles/galaxyprojectdotorg.galaxy/defaults/main.yml M roles/galaxyprojectdotorg.galaxy/meta/.galaxy_install_info M roles/galaxyprojectdotorg.galaxy/tasks/main.yml
Log Message: ----------- IE fixes
Commit: b56a94393f25cfc03515801c4d83256562da8e68 https://github.com/galaxyproject/usegalaxy-playbook/commit/b56a94393f25cfc03... Author: Nate Coraor nate@bx.psu.edu Date: 2017-04-18 (Tue, 18 Apr 2017)
Changed paths: M env/test/templates/galaxy/config/job_conf.xml.j2
Log Message: ----------- pylon1 -> pylon5
Commit: 86cafa4afe3c594cb25340990388f589cac0d3f6 https://github.com/galaxyproject/usegalaxy-playbook/commit/86cafa4afe3c594cb... Author: Nate Coraor nate@bx.psu.edu Date: 2017-04-18 (Tue, 18 Apr 2017)
Changed paths: M env/test/templates/galaxy/config/job_conf.xml.j2
Log Message: ----------- Merge branch 'reorg' of github.com:/galaxyproject/usegalaxy-playbook into reorg
Commit: 812c4c3451e2174aa07dd1566b0365210c408eee https://github.com/galaxyproject/usegalaxy-playbook/commit/812c4c3451e2174aa... Author: Nate Coraor nate@bx.psu.edu Date: 2017-04-18 (Tue, 18 Apr 2017)
Changed paths: M env/common/config.yml M env/test/group_vars/galaxyservers/vars.yml
Log Message: ----------- Move Test GIEs to Swarm
Commit: 8dd328d77980aaff3353f0cc554ebf76fbcb8e7f https://github.com/galaxyproject/usegalaxy-playbook/commit/8dd328d77980aaff3... Author: Nate Coraor nate@bx.psu.edu Date: 2017-04-18 (Tue, 18 Apr 2017)
Changed paths: M env/common/templates/supervisor/galaxy_gie_proxy.j2
Log Message: ----------- Fix GIE proxy port
Commit: 1a09141d4a929d05c02cfbf998efc19eee10caea https://github.com/galaxyproject/usegalaxy-playbook/commit/1a09141d4a929d05c... Author: Nate Coraor nate@bx.psu.edu Date: 2017-04-18 (Tue, 18 Apr 2017)
Changed paths: M env/test/files/galaxy/galaxy_version.yml M env/test/files/interactive_environments/plugins/.ansible_ie_role_current_version M env/test/files/interactive_environments/proxy/.ansible_ie_role_current_version
Log Message: ----------- Upgrade Test
Commit: 7b02be926f63742dab881d38cda7492af18d1ba6 https://github.com/galaxyproject/usegalaxy-playbook/commit/7b02be926f63742da... Author: Nate Coraor nate@bx.psu.edu Date: 2017-04-18 (Tue, 18 Apr 2017)
Changed paths: M env/test/host_vars/br005.bridges.psc.edu.yml
Log Message: ----------- pylon1 -> pylon5
Commit: 9ff176d1b0f074e93da2055e29b6decd16b09ead https://github.com/galaxyproject/usegalaxy-playbook/commit/9ff176d1b0f074e93... Author: Nate Coraor nate@bx.psu.edu Date: 2017-04-24 (Mon, 24 Apr 2017)
Changed paths: A env/common/files/pulsar/config/jetstream_dependency_resolvers_conf.xml M env/test/host_vars/jetstream-iu0.galaxyproject.org.yml M env/test/host_vars/jetstream-tacc0.galaxyproject.org.yml
Log Message: ----------- Use Conda on Jetstream
Commit: 359fee70192fd94fe8c2b505e77e94909f7f7bbf https://github.com/galaxyproject/usegalaxy-playbook/commit/359fee70192fd94fe... Author: Nate Coraor nate@bx.psu.edu Date: 2017-04-24 (Mon, 24 Apr 2017)
Changed paths: R env/common/files/pulsar/config/jetstream_dependency_resolvers_conf.xml A env/common/templates/pulsar/config/jetstream_dependency_resolvers_conf.xml.j2 M env/test/host_vars/jetstream-iu0.galaxyproject.org.yml M env/test/host_vars/jetstream-tacc0.galaxyproject.org.yml A env/test/templates/pulsar
Log Message: ----------- Install Conda locally on Jetstream
Commit: 7684bd4ff0f0222dbb82a16c95cc4b9dc606e9a7 https://github.com/galaxyproject/usegalaxy-playbook/commit/7684bd4ff0f0222db... Author: Nate Coraor nate@bx.psu.edu Date: 2017-04-28 (Fri, 28 Apr 2017)
Changed paths: M env/test/templates/galaxy/config/uwsgi.ini.j2
Log Message: ----------- Increase Test uWSGI buffer-size to hopefully eliminate (104: Connection reset by peer) while reading response header from upstream
Commit: d5480a5d067ba3629f8ecf2a008416c4973ec508 https://github.com/galaxyproject/usegalaxy-playbook/commit/d5480a5d067ba3629... Author: Nate Coraor nate@bx.psu.edu Date: 2017-04-28 (Fri, 28 Apr 2017)
Changed paths: M env/test/files/galaxy/galaxy_version.yml
Log Message: ----------- Update Test
Commit: 9f449f0603c50a25c9c6bb697878f6095691bea6 https://github.com/galaxyproject/usegalaxy-playbook/commit/9f449f0603c50a25c... Author: Nate Coraor nate@bx.psu.edu Date: 2017-05-01 (Mon, 01 May 2017)
Changed paths: M env/test/group_vars/galaxyservers/vars.yml
Log Message: ----------- Fix datamanager server name
Commit: dfe930e2290d6cbfb91bd8cb182595b4491fd7cf https://github.com/galaxyproject/usegalaxy-playbook/commit/dfe930e2290d6cbfb... Author: Nate Coraor nate@bx.psu.edu Date: 2017-05-02 (Tue, 02 May 2017)
Changed paths: M env/test/files/galaxy/galaxy_version.yml M env/test/files/interactive_environments/plugins/.ansible_ie_role_current_version M env/test/files/interactive_environments/plugins/common/templates/ie.mako M env/test/files/interactive_environments/plugins/ethercalc/static/js/ethercalc.js M env/test/files/interactive_environments/plugins/ethercalc/templates/ethercalc.mako M env/test/files/interactive_environments/plugins/jupyter/config/jupyter.ini.sample M env/test/files/interactive_environments/plugins/jupyter/templates/jupyter.mako M env/test/files/interactive_environments/plugins/rstudio/config/allowed_images.yml.sample M env/test/files/interactive_environments/plugins/rstudio/config/rstudio.ini.sample M env/test/files/interactive_environments/plugins/rstudio/static/js/rstudio.js M env/test/files/interactive_environments/plugins/rstudio/templates/rstudio.mako M env/test/files/interactive_environments/proxy/.ansible_ie_role_current_version M env/test/files/interactive_environments/proxy/package.json
Log Message: ----------- Update Test
Commit: 9fdad33717d819c7370b5d2c8413170f30fba1e7 https://github.com/galaxyproject/usegalaxy-playbook/commit/9fdad33717d819c73... Author: Nate Coraor nate@bx.psu.edu Date: 2017-05-02 (Tue, 02 May 2017)
Changed paths: M env/common/files/galaxy/dynamic_rules/multi_dynamic_walltime.py
Log Message: ----------- Override walltime in dynamic rules
Commit: 9e45cf23ef9cbc87f398b5d7b302de0bd7c814b1 https://github.com/galaxyproject/usegalaxy-playbook/commit/9e45cf23ef9cbc87f... Author: Nate Coraor nate@bx.psu.edu Date: 2017-05-02 (Tue, 02 May 2017)
Changed paths: M env/test/group_vars/galaxyservers/vars.yml
Log Message: ----------- Jupyter updates for Test
Commit: 49e404c4f6d83c9870f6c666fd9eaeb698920c59 https://github.com/galaxyproject/usegalaxy-playbook/commit/49e404c4f6d83c987... Author: Nate Coraor nate@bx.psu.edu Date: 2017-05-03 (Wed, 03 May 2017)
Changed paths: M env/test/group_vars/dbservers/vault.yml
Log Message: ----------- Add grafana
Commit: 61b4ab56cf483a5398f3272d992e8106cdccd135 https://github.com/galaxyproject/usegalaxy-playbook/commit/61b4ab56cf483a539... Author: Nate Coraor nate@bx.psu.edu Date: 2017-05-08 (Mon, 08 May 2017)
Changed paths: M env/test/files/galaxy/galaxy_version.yml M env/test/files/interactive_environments/plugins/.ansible_ie_role_current_version M env/test/files/interactive_environments/plugins/jupyter/config/allowed_images.yml.sample M env/test/files/interactive_environments/proxy/.ansible_ie_role_current_version M env/test/group_vars/galaxyservers/vars.yml
Log Message: ----------- Update Test
Commit: c034a067b23940feee7d32f63abfed6e375077a0 https://github.com/galaxyproject/usegalaxy-playbook/commit/c034a067b23940fee... Author: Nate Coraor nate@bx.psu.edu Date: 2017-05-09 (Tue, 09 May 2017)
Changed paths: M env/test/group_vars/ftpservers.yml M env/test/group_vars/galaxyservers/vars.yml M roles/galaxyprojectdotorg.proftpd/tasks/galaxy_auth.yml M roles/galaxyprojectdotorg.proftpd/templates/galaxy_auth.conf.j2
Log Message: ----------- Fix FTP on Test and enable PBKDF2.
Commit: 69ea530df07aec1e85d8c40e50479db9f43e1630 https://github.com/galaxyproject/usegalaxy-playbook/commit/69ea530df07aec1e8... Author: Nate Coraor nate@bx.psu.edu Date: 2017-05-09 (Tue, 09 May 2017)
Changed paths: M env/common/stack.yml R env/test/group_vars/galaxyswarmmanagers/vars.yml R env/test/group_vars/galaxyswarmmanagers/vault.yml A env/test/group_vars/galaxyswarmscaleservers/vars.yml A env/test/group_vars/galaxyswarmscaleservers/vault.yml M env/test/inventory A roles/usegalaxy_swarmscale/files/delete.yml A roles/usegalaxy_swarmscale/files/inc_spawn.yml A roles/usegalaxy_swarmscale/files/instance A roles/usegalaxy_swarmscale/files/inventory.head A roles/usegalaxy_swarmscale/files/inventory.spawn A roles/usegalaxy_swarmscale/files/spawn.yml A roles/usegalaxy_swarmscale/tasks/main.yml A roles/usegalaxy_swarmscale/templates/ssh_config.jetstream.j2
Log Message: ----------- Swarm scale
Commit: 385c2a31d7eeb02186330226e50db80919f7b2ff https://github.com/galaxyproject/usegalaxy-playbook/commit/385c2a31d7eeb0218... Author: Nate Coraor nate@bx.psu.edu Date: 2017-05-11 (Thu, 11 May 2017)
Changed paths: M env/common/update.yml R env/test/files/interactive_environments/plugins/.ansible_ie_role_current_version R env/test/files/interactive_environments/plugins/bam_iobio/config/bam_iobio.ini.sample R env/test/files/interactive_environments/plugins/bam_iobio/config/bam_iobio.xml R env/test/files/interactive_environments/plugins/bam_iobio/static/js/bam_iobio.js R env/test/files/interactive_environments/plugins/bam_iobio/templates/bam_iobio.mako R env/test/files/interactive_environments/plugins/common/templates/ie.mako R env/test/files/interactive_environments/plugins/ethercalc/config/allowed_images.yml.sample R env/test/files/interactive_environments/plugins/ethercalc/config/ethercalc.ini.sample R env/test/files/interactive_environments/plugins/ethercalc/config/ethercalc.xml R env/test/files/interactive_environments/plugins/ethercalc/static/js/ethercalc.js R env/test/files/interactive_environments/plugins/ethercalc/templates/ethercalc.mako R env/test/files/interactive_environments/plugins/interactive_environments.dtd R env/test/files/interactive_environments/plugins/jupyter/config/allowed_images.yml.sample R env/test/files/interactive_environments/plugins/jupyter/config/jupyter.ini.sample R env/test/files/interactive_environments/plugins/jupyter/config/jupyter.xml R env/test/files/interactive_environments/plugins/jupyter/static/js/jupyter.js R env/test/files/interactive_environments/plugins/jupyter/templates/jupyter.mako R env/test/files/interactive_environments/plugins/neo/config/allowed_images.yml.sample R env/test/files/interactive_environments/plugins/neo/config/neo.ini.sample R env/test/files/interactive_environments/plugins/neo/config/neo.xml R env/test/files/interactive_environments/plugins/neo/static/js/neo.js R env/test/files/interactive_environments/plugins/neo/templates/neo.mako R env/test/files/interactive_environments/plugins/phinch/config/phinch.ini.sample R env/test/files/interactive_environments/plugins/phinch/config/phinch.xml R env/test/files/interactive_environments/plugins/phinch/static/js/phinch.js R env/test/files/interactive_environments/plugins/phinch/templates/phinch.mako R env/test/files/interactive_environments/plugins/rstudio/config/allowed_images.yml.sample R env/test/files/interactive_environments/plugins/rstudio/config/rstudio.ini.sample R env/test/files/interactive_environments/plugins/rstudio/config/rstudio.xml R env/test/files/interactive_environments/plugins/rstudio/static/js/crypto/base64.js R env/test/files/interactive_environments/plugins/rstudio/static/js/crypto/jsbn.js R env/test/files/interactive_environments/plugins/rstudio/static/js/crypto/prng4.js R env/test/files/interactive_environments/plugins/rstudio/static/js/crypto/rng.js R env/test/files/interactive_environments/plugins/rstudio/static/js/crypto/rsa.js R env/test/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio.big.js R env/test/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio.min.js R env/test/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio/base64.js R env/test/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio/jsbn.js R env/test/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio/prng4.js R env/test/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio/rng.js R env/test/files/interactive_environments/plugins/rstudio/static/js/crypto/rstudio/rsa.js R env/test/files/interactive_environments/plugins/rstudio/static/js/crypto/wu/base64.js R env/test/files/interactive_environments/plugins/rstudio/static/js/crypto/wu/jsbn.js R env/test/files/interactive_environments/plugins/rstudio/static/js/crypto/wu/prng4.js R env/test/files/interactive_environments/plugins/rstudio/static/js/crypto/wu/rng.js R env/test/files/interactive_environments/plugins/rstudio/static/js/crypto/wu/rsa.js R env/test/files/interactive_environments/plugins/rstudio/static/js/rstudio.js R env/test/files/interactive_environments/plugins/rstudio/templates/rstudio.mako R env/test/files/interactive_environments/proxy/.ansible_ie_role_current_version R env/test/files/interactive_environments/proxy/Dockerfile R env/test/files/interactive_environments/proxy/README.md R env/test/files/interactive_environments/proxy/lib/main.js R env/test/files/interactive_environments/proxy/lib/mapper.js R env/test/files/interactive_environments/proxy/lib/proxy.js R env/test/files/interactive_environments/proxy/package.json A roles/galaxyproject.interactive_environments/README.md A roles/galaxyproject.interactive_environments/defaults/main.yml A roles/galaxyproject.interactive_environments/handlers/main.yml A roles/galaxyproject.interactive_environments/meta/.galaxy_install_info A roles/galaxyproject.interactive_environments/meta/main.yml A roles/galaxyproject.interactive_environments/tasks/docker_ssl.yml A roles/galaxyproject.interactive_environments/tasks/install_dependencies.yml A roles/galaxyproject.interactive_environments/tasks/main.yml A roles/galaxyproject.interactive_environments/tasks/supervisor.yml A roles/galaxyproject.interactive_environments/tasks/synchronize_components.yml A roles/galaxyproject.interactive_environments/tasks/webserver_conf.yml A roles/galaxyproject.interactive_environments/templates/_prefix.j2 A roles/galaxyproject.interactive_environments/templates/config.ini.j2 A roles/galaxyproject.interactive_environments/templates/generic_apache.conf.j2 A roles/galaxyproject.interactive_environments/templates/generic_nginx.conf.j2 A roles/galaxyproject.interactive_environments/templates/jupyter_apache.conf.j2 A roles/galaxyproject.interactive_environments/templates/jupyter_nginx.conf.j2 A roles/galaxyproject.interactive_environments/templates/proxy_supervisor.conf.j2 R roles/galaxyprojectdotorg.interactive_environments/README.md R roles/galaxyprojectdotorg.interactive_environments/defaults/main.yml R roles/galaxyprojectdotorg.interactive_environments/handlers/main.yml R roles/galaxyprojectdotorg.interactive_environments/meta/.galaxy_install_info R roles/galaxyprojectdotorg.interactive_environments/meta/main.yml R roles/galaxyprojectdotorg.interactive_environments/tasks/docker_ssl.yml R roles/galaxyprojectdotorg.interactive_environments/tasks/extract_component.yml R roles/galaxyprojectdotorg.interactive_environments/tasks/install_dependencies.yml R roles/galaxyprojectdotorg.interactive_environments/tasks/main.yml R roles/galaxyprojectdotorg.interactive_environments/tasks/supervisor.yml R roles/galaxyprojectdotorg.interactive_environments/tasks/synchronize_components.yml R roles/galaxyprojectdotorg.interactive_environments/tasks/webserver_conf.yml R roles/galaxyprojectdotorg.interactive_environments/templates/_prefix.j2 R roles/galaxyprojectdotorg.interactive_environments/templates/config.ini.j2 R roles/galaxyprojectdotorg.interactive_environments/templates/generic_apache.conf.j2 R roles/galaxyprojectdotorg.interactive_environments/templates/generic_nginx.conf.j2 R roles/galaxyprojectdotorg.interactive_environments/templates/jupyter_apache.conf.j2 R roles/galaxyprojectdotorg.interactive_environments/templates/jupyter_nginx.conf.j2 R roles/galaxyprojectdotorg.interactive_environments/templates/proxy_supervisor.conf.j2
Log Message: ----------- Update the interactive_environments role and stop storing a copy of GIEs in the playbook
Commit: c318d9a95c079d27c3c8ee72333d12c6dd52c4e2 https://github.com/galaxyproject/usegalaxy-playbook/commit/c318d9a95c079d27c... Author: Nate Coraor nate@bx.psu.edu Date: 2017-05-11 (Thu, 11 May 2017)
Changed paths: M env/test/files/galaxy/galaxy_version.yml
Log Message: ----------- Update Test
Commit: fbd3d5ccb119814c8a42dc6e10d2007ac203da10 https://github.com/galaxyproject/usegalaxy-playbook/commit/fbd3d5ccb119814c8... Author: Nate Coraor nate@bx.psu.edu Date: 2017-05-11 (Thu, 11 May 2017)
Changed paths: M env/common/config.yml M env/common/pulsar.yml M env/common/stack.yml M env/common/update.yml A roles/galaxyproject.galaxy/README.md A roles/galaxyproject.galaxy/defaults/main.yml A roles/galaxyproject.galaxy/files/errordocs/content_bg.png A roles/galaxyproject.galaxy/files/errordocs/error_message_icon.png A roles/galaxyproject.galaxy/files/errordocs/masthead_bg.png A roles/galaxyproject.galaxy/files/makepyc.py A roles/galaxyproject.galaxy/handlers/main.yml A roles/galaxyproject.galaxy/meta/.galaxy_install_info A roles/galaxyproject.galaxy/meta/main.yml A roles/galaxyproject.galaxy/tasks/clone.yml A roles/galaxyproject.galaxy/tasks/database.yml A roles/galaxyproject.galaxy/tasks/dependencies.yml A roles/galaxyproject.galaxy/tasks/download.yml A roles/galaxyproject.galaxy/tasks/errordocs.yml A roles/galaxyproject.galaxy/tasks/main.yml A roles/galaxyproject.galaxy/tasks/mutable_setup.yml A roles/galaxyproject.galaxy/tasks/static_setup.yml A roles/galaxyproject.galaxy/tasks/virtualenv.yml A roles/galaxyproject.galaxy/templates/errordocs/413/index.html.j2 A roles/galaxyproject.galaxy/templates/errordocs/502/index.shtml.j2 A roles/galaxyproject.galaxy/templates/galaxy.ini.j2 A roles/galaxyproject.galaxy_toolshed/README.md A roles/galaxyproject.galaxy_toolshed/defaults/main.yml A roles/galaxyproject.galaxy_toolshed/handlers/main.yml A roles/galaxyproject.galaxy_toolshed/meta/.galaxy_install_info A roles/galaxyproject.galaxy_toolshed/meta/main.yml A roles/galaxyproject.galaxy_toolshed/tasks/database.yml A roles/galaxyproject.galaxy_toolshed/tasks/main.yml A roles/galaxyproject.galaxy_toolshed/tasks/static_setup.yml A roles/galaxyproject.galaxy_toolshed/templates/tool_shed.ini.j2 A roles/galaxyproject.galaxy_toolshed/templates/user_info.xml.j2 A roles/galaxyproject.nginx/README.md A roles/galaxyproject.nginx/defaults/main.yml A roles/galaxyproject.nginx/handlers/main.yml A roles/galaxyproject.nginx/meta/.galaxy_install_info A roles/galaxyproject.nginx/meta/main.yml A roles/galaxyproject.nginx/tasks/apt.yml A roles/galaxyproject.nginx/tasks/main.yml A roles/galaxyproject.nginx/tasks/pkgin.yml A roles/galaxyproject.nginx/tasks/yum.yml A roles/galaxyproject.nginx/templates/epel-nginx.conf.j2 A roles/galaxyproject.nginx/templates/http_options.conf.j2 A roles/galaxyproject.nginx/templates/pkgin-nginx.conf.j2 A roles/galaxyproject.nginx/templates/ssl.conf.j2 A roles/galaxyproject.nginx/templates/supervisord.conf.j2 A roles/galaxyproject.nginx/vars/pkgin.yml A roles/galaxyproject.postgresql/.gitignore A roles/galaxyproject.postgresql/README.md A roles/galaxyproject.postgresql/defaults/main.yml A roles/galaxyproject.postgresql/files/get_repo_rpm_release.py A roles/galaxyproject.postgresql/handlers/main.yml A roles/galaxyproject.postgresql/meta/.galaxy_install_info A roles/galaxyproject.postgresql/meta/main.yml A roles/galaxyproject.postgresql/tasks/backup.yml A roles/galaxyproject.postgresql/tasks/debian.yml A roles/galaxyproject.postgresql/tasks/main.yml A roles/galaxyproject.postgresql/tasks/redhat.yml A roles/galaxyproject.postgresql/templates/20ansible_backup.conf.j2 A roles/galaxyproject.postgresql/templates/25ansible_postgresql.conf.j2 A roles/galaxyproject.postgresql/templates/archive_wal.sh.j2 A roles/galaxyproject.postgresql/templates/backup_working_wal.sh.j2 A roles/galaxyproject.postgresql/templates/pg_hba.conf.debian.j2 A roles/galaxyproject.postgresql/templates/pg_hba.conf.redhat.j2 A roles/galaxyproject.postgresql/templates/scheduled_backup.sh.j2 A roles/galaxyproject.postgresql/vars/debian.yml A roles/galaxyproject.postgresql/vars/main.yml A roles/galaxyproject.postgresql/vars/redhat.yml A roles/galaxyproject.proftpd/.travis.yml A roles/galaxyproject.proftpd/README.md A roles/galaxyproject.proftpd/defaults/main.yml A roles/galaxyproject.proftpd/handlers/main.yml A roles/galaxyproject.proftpd/meta/main.yml A roles/galaxyproject.proftpd/tasks/debian.yml A roles/galaxyproject.proftpd/tasks/galaxy_auth.yml A roles/galaxyproject.proftpd/tasks/main.yml A roles/galaxyproject.proftpd/tasks/redhat.yml A roles/galaxyproject.proftpd/tasks/tls.yml A roles/galaxyproject.proftpd/templates/galaxy_auth.conf.j2 A roles/galaxyproject.proftpd/templates/server.conf.j2 A roles/galaxyproject.proftpd/templates/tls.conf.j2 A roles/galaxyproject.proftpd/tests/inventory A roles/galaxyproject.proftpd/tests/test.yml A roles/galaxyproject.proftpd/vars/debian.yml A roles/galaxyproject.proftpd/vars/main.yml A roles/galaxyproject.proftpd/vars/redhat.yml A roles/galaxyproject.pulsar/README.md A roles/galaxyproject.pulsar/defaults/main.yml A roles/galaxyproject.pulsar/meta/.galaxy_install_info A roles/galaxyproject.pulsar/meta/main.yml A roles/galaxyproject.pulsar/tasks/main.yml A roles/galaxyproject.pulsar/templates/app.yml.j2 A roles/galaxyproject.pulsar/templates/job_managers.ini.j2 A roles/galaxyproject.pulsar/templates/job_metrics_conf.xml.j2 A roles/galaxyproject.pulsar/templates/local_env.sh.j2 A roles/galaxyproject.pulsar/templates/server.ini.j2 A roles/galaxyproject.tools/LICENSE A roles/galaxyproject.tools/README.md A roles/galaxyproject.tools/defaults/main.yml A roles/galaxyproject.tools/files/README.md A roles/galaxyproject.tools/files/dbkeys_list.yaml.sample A roles/galaxyproject.tools/files/install_tool_shed_tools.py A roles/galaxyproject.tools/files/tool_list.yaml A roles/galaxyproject.tools/files/tool_list.yaml.sample A roles/galaxyproject.tools/meta/.galaxy_install_info A roles/galaxyproject.tools/meta/main.yml A roles/galaxyproject.tools/tasks/main.yml A roles/galaxyproject.tools/tasks/tools.yml R roles/galaxyprojectdotorg.galaxy/README.md R roles/galaxyprojectdotorg.galaxy/defaults/main.yml R roles/galaxyprojectdotorg.galaxy/files/errordocs/content_bg.png R roles/galaxyprojectdotorg.galaxy/files/errordocs/error_message_icon.png R roles/galaxyprojectdotorg.galaxy/files/errordocs/masthead_bg.png R roles/galaxyprojectdotorg.galaxy/files/makepyc.py R roles/galaxyprojectdotorg.galaxy/handlers/main.yml R roles/galaxyprojectdotorg.galaxy/meta/.galaxy_install_info R roles/galaxyprojectdotorg.galaxy/meta/main.yml R roles/galaxyprojectdotorg.galaxy/tasks/clone.yml R roles/galaxyprojectdotorg.galaxy/tasks/database.yml R roles/galaxyprojectdotorg.galaxy/tasks/dependencies.yml R roles/galaxyprojectdotorg.galaxy/tasks/download.yml R roles/galaxyprojectdotorg.galaxy/tasks/errordocs.yml R roles/galaxyprojectdotorg.galaxy/tasks/main.yml R roles/galaxyprojectdotorg.galaxy/tasks/mutable_setup.yml R roles/galaxyprojectdotorg.galaxy/tasks/static_setup.yml R roles/galaxyprojectdotorg.galaxy/tasks/virtualenv.yml R roles/galaxyprojectdotorg.galaxy/templates/errordocs/413/index.html.j2 R roles/galaxyprojectdotorg.galaxy/templates/errordocs/502/index.shtml.j2 R roles/galaxyprojectdotorg.galaxy/templates/galaxy.ini.j2 R roles/galaxyprojectdotorg.galaxy_toolshed/README.md R roles/galaxyprojectdotorg.galaxy_toolshed/defaults/main.yml R roles/galaxyprojectdotorg.galaxy_toolshed/handlers/main.yml R roles/galaxyprojectdotorg.galaxy_toolshed/meta/.galaxy_install_info R roles/galaxyprojectdotorg.galaxy_toolshed/meta/main.yml R roles/galaxyprojectdotorg.galaxy_toolshed/tasks/database.yml R roles/galaxyprojectdotorg.galaxy_toolshed/tasks/main.yml R roles/galaxyprojectdotorg.galaxy_toolshed/tasks/static_setup.yml R roles/galaxyprojectdotorg.galaxy_toolshed/templates/tool_shed.ini.j2 R roles/galaxyprojectdotorg.galaxy_toolshed/templates/user_info.xml.j2 R roles/galaxyprojectdotorg.nginx/README.md R roles/galaxyprojectdotorg.nginx/defaults/main.yml R roles/galaxyprojectdotorg.nginx/handlers/main.yml R roles/galaxyprojectdotorg.nginx/meta/.galaxy_install_info R roles/galaxyprojectdotorg.nginx/meta/main.yml R roles/galaxyprojectdotorg.nginx/tasks/apt.yml R roles/galaxyprojectdotorg.nginx/tasks/main.yml R roles/galaxyprojectdotorg.nginx/tasks/pkgin.yml R roles/galaxyprojectdotorg.nginx/tasks/yum.yml R roles/galaxyprojectdotorg.nginx/templates/epel-nginx.conf.j2 R roles/galaxyprojectdotorg.nginx/templates/http_options.conf.j2 R roles/galaxyprojectdotorg.nginx/templates/pkgin-nginx.conf.j2 R roles/galaxyprojectdotorg.nginx/templates/ssl.conf.j2 R roles/galaxyprojectdotorg.nginx/templates/supervisord.conf.j2 R roles/galaxyprojectdotorg.nginx/vars/pkgin.yml R roles/galaxyprojectdotorg.postgresql/.gitignore R roles/galaxyprojectdotorg.postgresql/README.md R roles/galaxyprojectdotorg.postgresql/defaults/main.yml R roles/galaxyprojectdotorg.postgresql/files/get_repo_rpm_release.py R roles/galaxyprojectdotorg.postgresql/handlers/main.yml R roles/galaxyprojectdotorg.postgresql/meta/.galaxy_install_info R roles/galaxyprojectdotorg.postgresql/meta/main.yml R roles/galaxyprojectdotorg.postgresql/tasks/backup.yml R roles/galaxyprojectdotorg.postgresql/tasks/debian.yml R roles/galaxyprojectdotorg.postgresql/tasks/main.yml R roles/galaxyprojectdotorg.postgresql/tasks/redhat.yml R roles/galaxyprojectdotorg.postgresql/templates/20ansible_backup.conf.j2 R roles/galaxyprojectdotorg.postgresql/templates/25ansible_postgresql.conf.j2 R roles/galaxyprojectdotorg.postgresql/templates/archive_wal.sh.j2 R roles/galaxyprojectdotorg.postgresql/templates/backup_working_wal.sh.j2 R roles/galaxyprojectdotorg.postgresql/templates/pg_hba.conf.debian.j2 R roles/galaxyprojectdotorg.postgresql/templates/pg_hba.conf.redhat.j2 R roles/galaxyprojectdotorg.postgresql/templates/scheduled_backup.sh.j2 R roles/galaxyprojectdotorg.postgresql/vars/debian.yml R roles/galaxyprojectdotorg.postgresql/vars/main.yml R roles/galaxyprojectdotorg.postgresql/vars/redhat.yml R roles/galaxyprojectdotorg.proftpd/.travis.yml R roles/galaxyprojectdotorg.proftpd/README.md R roles/galaxyprojectdotorg.proftpd/defaults/main.yml R roles/galaxyprojectdotorg.proftpd/handlers/main.yml R roles/galaxyprojectdotorg.proftpd/meta/main.yml R roles/galaxyprojectdotorg.proftpd/tasks/debian.yml R roles/galaxyprojectdotorg.proftpd/tasks/galaxy_auth.yml R roles/galaxyprojectdotorg.proftpd/tasks/main.yml R roles/galaxyprojectdotorg.proftpd/tasks/redhat.yml R roles/galaxyprojectdotorg.proftpd/tasks/tls.yml R roles/galaxyprojectdotorg.proftpd/templates/galaxy_auth.conf.j2 R roles/galaxyprojectdotorg.proftpd/templates/server.conf.j2 R roles/galaxyprojectdotorg.proftpd/templates/tls.conf.j2 R roles/galaxyprojectdotorg.proftpd/tests/inventory R roles/galaxyprojectdotorg.proftpd/tests/test.yml R roles/galaxyprojectdotorg.proftpd/vars/debian.yml R roles/galaxyprojectdotorg.proftpd/vars/main.yml R roles/galaxyprojectdotorg.proftpd/vars/redhat.yml R roles/galaxyprojectdotorg.pulsar/README.md R roles/galaxyprojectdotorg.pulsar/defaults/main.yml R roles/galaxyprojectdotorg.pulsar/meta/.galaxy_install_info R roles/galaxyprojectdotorg.pulsar/meta/main.yml R roles/galaxyprojectdotorg.pulsar/tasks/main.yml R roles/galaxyprojectdotorg.pulsar/templates/app.yml.j2 R roles/galaxyprojectdotorg.pulsar/templates/job_managers.ini.j2 R roles/galaxyprojectdotorg.pulsar/templates/job_metrics_conf.xml.j2 R roles/galaxyprojectdotorg.pulsar/templates/local_env.sh.j2 R roles/galaxyprojectdotorg.pulsar/templates/server.ini.j2 R roles/galaxyprojectdotorg.tools/LICENSE R roles/galaxyprojectdotorg.tools/README.md R roles/galaxyprojectdotorg.tools/defaults/main.yml R roles/galaxyprojectdotorg.tools/files/README.md R roles/galaxyprojectdotorg.tools/files/dbkeys_list.yaml.sample R roles/galaxyprojectdotorg.tools/files/install_tool_shed_tools.py R roles/galaxyprojectdotorg.tools/files/tool_list.yaml R roles/galaxyprojectdotorg.tools/files/tool_list.yaml.sample R roles/galaxyprojectdotorg.tools/meta/.galaxy_install_info R roles/galaxyprojectdotorg.tools/meta/main.yml R roles/galaxyprojectdotorg.tools/tasks/main.yml R roles/galaxyprojectdotorg.tools/tasks/tools.yml
Log Message: ----------- Rename roles due to name change in Ansible Galaxy
Commit: d812cdd806a7032a981d7f5d8c903c3957846ae7 https://github.com/galaxyproject/usegalaxy-playbook/commit/d812cdd806a7032a9... Author: Nate Coraor nate@bx.psu.edu Date: 2017-05-12 (Fri, 12 May 2017)
Changed paths: M env/test/group_vars/dbservers/vault.yml
Log Message: ----------- Update DB access list
Commit: e24a4fee0cb63c1151a583a38bbabf69afdf0e7c https://github.com/galaxyproject/usegalaxy-playbook/commit/e24a4fee0cb63c115... Author: Nate Coraor nate@bx.psu.edu Date: 2017-05-12 (Fri, 12 May 2017)
Changed paths: M README.md R common/docker/galaxy-installer/Dockerfile.main R common/docker/galaxy-installer/Dockerfile.test R common/docker/galaxy-installer/run_main.sh R common/docker/galaxy-installer/run_test.sh R common/docker/galaxy-update/Dockerfile R common/docker/galaxy-update/condarc R common/group_vars/all.yml R common/group_vars/all_debian_based_hosts.yml R common/group_vars/redhat_dbservers.yml R common/group_vars/webservers.yml R common/host_vars/galaxy-db-01.tacc.utexas.edu.yml R common/inventory R common/secret_vars/ssl.yml R common/secret_vars/supervisorusers.yml R common/secret_vars/trellocardcreatorservers.yml R common_infrastructure.yml R ec2.yml A env/common/files/galaxy/dynamic_rules/jetstream.py A env/common/files/galaxy/dynamic_rules/single_dynamic_memory.py A env/common/files/galaxy/static/welcome_img/GCC2017EarlyReg.png A env/common/files/galaxy/static/welcome_img/ISMBECCB2017Tutorial.png M env/common/group_vars/toolshedwebservers.yml M env/common/templates/galaxy/static/welcome.html.j2 A env/common/tools.yml M env/common/update_shed.yml A env/main/_inc_config_post_tasks.yml A env/main/_inc_restart.yml A env/main/_inc_snapshot.yml A env/main/_inc_static.yml A env/main/config.yml A env/main/files/galaxy/config/builds.txt A env/main/files/galaxy/config/data_manager_conf.xml A env/main/files/galaxy/config/disposable_email_blacklist.conf A env/main/files/galaxy/config/job_metrics_conf.xml A env/main/files/galaxy/config/job_resource_params_conf.xml A env/main/files/galaxy/config/nagios_tool_conf.xml A env/main/files/galaxy/config/object_store_conf.xml A env/main/files/galaxy/config/pulsar_jetstream.yml A env/main/files/galaxy/config/pulsar_jetstream_actions.yml A env/main/files/galaxy/config/pulsar_stampede_actions.yml A env/main/files/galaxy/config/tool_conf.xml A env/main/files/galaxy/config/tool_data_table_conf.xml A env/main/files/galaxy/config/tool_sheds_conf.xml A env/main/files/galaxy/config/ucsc_build_sites.txt A env/main/files/galaxy/dynamic_rules/bridges_select.py A env/main/files/galaxy/dynamic_rules/multi_dynamic_walltime.py A env/main/files/galaxy/dynamic_rules/nvc_dynamic_memory.py A env/main/files/galaxy/dynamic_rules/reserved.py A env/main/files/galaxy/error A env/main/files/galaxy/galaxy_version.yml A env/main/files/galaxy/nagios/echo_main_bridges.xml A env/main/files/galaxy/nagios/echo_main_cluster.xml A env/main/files/galaxy/nagios/echo_main_jetstream_iu.xml A env/main/files/galaxy/nagios/echo_main_jetstream_tacc.xml A env/main/files/galaxy/nagios/echo_main_stampede.xml A env/main/files/galaxy/nagios/echo_main_w1_handler0.xml A env/main/files/galaxy/nagios/echo_main_w1_handler1.xml A env/main/files/galaxy/nagios/echo_main_w1_handler2.xml A env/main/files/galaxy/nagios/echo_main_w2_handler0.xml A env/main/files/galaxy/nagios/echo_main_w2_handler1.xml A env/main/files/galaxy/nagios/echo_main_w2_handler2.xml A env/main/files/galaxy/static A env/main/files/galaxy/tool_list.yaml A 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R production/files/interactive_environments/plugins/neo/config/neo.xml R production/files/interactive_environments/plugins/neo/static/js/neo.js R production/files/interactive_environments/plugins/neo/templates/neo.mako R production/files/interactive_environments/plugins/phinch/config/phinch.ini.sample R production/files/interactive_environments/plugins/phinch/config/phinch.xml R production/files/interactive_environments/plugins/phinch/static/js/phinch.js R production/files/interactive_environments/plugins/phinch/templates/phinch.mako R production/files/interactive_environments/plugins/rstudio/config/allowed_images.yml.sample R production/files/interactive_environments/plugins/rstudio/config/rstudio.ini.sample R production/files/interactive_environments/plugins/rstudio/config/rstudio.xml R production/files/interactive_environments/plugins/rstudio/static/js/crypto/base64.js R production/files/interactive_environments/plugins/rstudio/static/js/crypto/jsbn.js R 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R production/group_vars/all.yml R production/group_vars/galaxydbservers.yml R production/group_vars/galaxyjobservers.yml R production/group_vars/galaxyservers.yml R production/group_vars/galaxystagingservers.yml R production/group_vars/galaxywebservers.yml R production/group_vars/pulsarservers.yml R production/group_vars/toolsheddbservers.yml R production/group_vars/toolshedservers.yml R production/host_vars/br005.bridges.psc.edu.yml R production/host_vars/galaxy-web-01.tacc.utexas.edu.yml R production/host_vars/galaxy-web-02.tacc.utexas.edu.yml R production/host_vars/galaxy-web-03.tacc.utexas.edu.yml R production/host_vars/galaxy-web-04.tacc.utexas.edu.yml R production/host_vars/jetstream-iu0.galaxyproject.org.yml R production/host_vars/jetstream-tacc0.galaxyproject.org.yml R production/host_vars/login5.stampede.tacc.utexas.edu.yml R production/host_vars/radegast.galaxyproject.org.yml R production/inventory R production/secret_vars/galaxydbservers.yml R production/secret_vars/galaxyservers.yml R production/secret_vars/pulsarservers.yml R production/secret_vars/toolshedservers.yml R stage/host_vars/radegast.galaxyproject.org.yml R stage/inventory R stage/secret_vars/toolshedservers.yml R templates/galaxy/common/config/reports.ini.j2 R templates/galaxy/common/static/welcome.html.j2 R templates/galaxy/usegalaxy.org/config/build_sites.yml.j2 R templates/galaxy/usegalaxy.org/config/job_conf.xml.j2 R templates/galaxy/usegalaxy.org/config/reports.ini.j2 R templates/galaxy/usegalaxy.org/config/uwsgi.ini.j2 R templates/galaxy/usegalaxy.org/static R templates/nginx/galaxy_bx.j2 R templates/nginx/usegalaxy.j2 R templates/nginx/usegalaxy_rewrites.conf.j2 R templates/nginx/usegalaxy_staging.j2 R templates/supervisor/galaxy.j2 R templates/supervisor/galaxy_group.j2 R templates/supervisor/galaxy_handler.j2 R templates/supervisor/galaxy_impersonate.j2 R templates/supervisor/galaxy_reports.j2 R tools.yml R toolshed_infrastructure.yml
Log Message: ----------- Reorganize Main and MTS for new playbook structure. Not deployed yet.
Commit: ad99d8528a1b4eaa650edf3783ccd81cfa835e42 https://github.com/galaxyproject/usegalaxy-playbook/commit/ad99d8528a1b4eaa6... Author: Nate Coraor nate@bx.psu.edu Date: 2017-05-16 (Tue, 16 May 2017)
Changed paths: M README.md M env/common/tools.yml M env/common/update_shed.yml M env/main/group_vars/galaxyservers/vars.yml M env/main/group_vars/galaxystagingservers.yml M env/main/group_vars/pulsarservers/vars.yml M env/main/group_vars/webservers.yml M env/test/group_vars/galaxyservers/vars.yml M env/test/group_vars/pulsarservers/vars.yml M env/test/group_vars/webservers/vars.yml M env/testtoolshed/group_vars/toolshedservers/vars.yml M env/toolshed/group_vars/toolshedservers/vars.yml M roles/galaxyproject.galaxy/README.md M roles/galaxyproject.galaxy/defaults/main.yml M roles/galaxyproject.galaxy/handlers/main.yml M roles/galaxyproject.galaxy/tasks/main.yml M roles/galaxyproject.galaxy_toolshed/README.md M roles/galaxyproject.galaxy_toolshed/defaults/main.yml M roles/galaxyproject.galaxy_toolshed/handlers/main.yml M roles/galaxyproject.galaxy_toolshed/tasks/main.yml M roles/galaxyproject.interactive_environments/README.md M roles/galaxyproject.interactive_environments/defaults/main.yml M roles/galaxyproject.interactive_environments/handlers/main.yml M roles/galaxyproject.interactive_environments/tasks/main.yml M roles/galaxyproject.nginx/README.md M roles/galaxyproject.nginx/defaults/main.yml M roles/galaxyproject.nginx/handlers/main.yml M roles/galaxyproject.nginx/tasks/main.yml M roles/galaxyproject.proftpd/README.md M roles/galaxyproject.proftpd/defaults/main.yml M roles/galaxyproject.proftpd/handlers/main.yml M roles/galaxyproject.proftpd/tasks/debian.yml M roles/galaxyproject.proftpd/tasks/galaxy_auth.yml M roles/galaxyproject.proftpd/tasks/main.yml M roles/galaxyproject.proftpd/tasks/redhat.yml M roles/galaxyproject.proftpd/tasks/tls.yml M roles/galaxyproject.proftpd/tests/test.yml M roles/galaxyproject.proftpd/vars/main.yml M roles/galaxyproject.pulsar/README.md M roles/galaxyproject.pulsar/defaults/main.yml M roles/galaxyproject.pulsar/tasks/main.yml
Log Message: ----------- Finish renaming galaxyprojectdotorg -> galaxyproject
Commit: eedfea43fdbb2fe0a0e31d1dd077341f632f6b87 https://github.com/galaxyproject/usegalaxy-playbook/commit/eedfea43fdbb2fe0a... Author: Nate Coraor nate@bx.psu.edu Date: 2017-05-16 (Tue, 16 May 2017)
Changed paths: M env/toolshed/group_vars/toolshedservers/vars.yml
Log Message: ----------- Update MTS
Commit: 890912424aae8cc959f25fe88d70d82a5c0e5102 https://github.com/galaxyproject/usegalaxy-playbook/commit/890912424aae8cc95... Author: Nate Coraor nate@bx.psu.edu Date: 2017-05-17 (Wed, 17 May 2017)
Log Message: ----------- Fixed conda env generation on Jetstream: Manually upgraded galaxy-lib from 16.7.10 to 17.5.9. No committable changes.
Commit: 376b8c62fac4419299ec0c85cf2921c8aa47da70 https://github.com/galaxyproject/usegalaxy-playbook/commit/376b8c62fac441929... Author: Nate Coraor nate@bx.psu.edu Date: 2017-05-17 (Wed, 17 May 2017)
Changed paths: M env/testtoolshed/group_vars/toolshedservers/vars.yml
Log Message: ----------- Update Test Tool Shed
Commit: 19846e3ebdd8597e9e21d9e6a4f3ec0c13b8491c https://github.com/galaxyproject/usegalaxy-playbook/commit/19846e3ebdd8597e9... Author: Martin Cech marten@bx.psu.edu Date: 2017-05-30 (Tue, 30 May 2017)
Changed paths: M env/main/templates/galaxy/config/job_conf.xml.j2
Log Message: ----------- give salmon 16gb and rna_Star 64
Commit: 9c6af8b03364613a7873fb91407893b55ce6fcb0 https://github.com/galaxyproject/usegalaxy-playbook/commit/9c6af8b03364613a7... Author: Nate Coraor nate@bx.psu.edu Date: 2017-05-30 (Tue, 30 May 2017)
Changed paths: M env/common/files/galaxy/dynamic_rules/multi_dynamic_walltime.py M env/main/files/galaxy/galaxy_version.yml M env/main/files/galaxy/var/integrated_tool_panel.xml M env/main/files/galaxy/var/shed_data_manager_conf.xml M env/main/files/galaxy/var/shed_tool_data_table_conf.xml
Log Message: ----------- Fix walltime exception for align families running on local cluster and update Main
Conflicts: production/galaxy_version.yml
Commit: 622272d426088faad13f230d765b6cb42d2aa2dd https://github.com/galaxyproject/usegalaxy-playbook/commit/622272d426088faad... Author: Martin Cech marten@bx.psu.edu Date: 2017-06-01 (Thu, 01 Jun 2017)
Changed paths: M env/main/templates/galaxy/config/job_conf.xml.j2
Log Message: ----------- move rna_star to different destination
to dynamic_local_stampede_select_dynamic_walltime
Commit: ce7d009db5b56e7a31c37b6858418a34d9a0e8c2 https://github.com/galaxyproject/usegalaxy-playbook/commit/ce7d009db5b56e7a3... Author: Nate Coraor nate@bx.psu.edu Date: 2017-06-01 (Thu, 01 Jun 2017)
Changed paths: M env/main/files/galaxy/galaxy_version.yml
Log Message: ----------- Update Main
Commit: 8f9080fbb5039af509b30a28a13c9af42f9054e8 https://github.com/galaxyproject/usegalaxy-playbook/commit/8f9080fbb5039af50... Author: Nate Coraor nate@bx.psu.edu Date: 2017-06-15 (Thu, 15 Jun 2017)
Changed paths: M env/test/group_vars/galaxyservers/vars.yml
Log Message: ----------- Disable conda copying for per-job envs since all envs are now mulled. always_symlink has also been enabled in _condarc
Commit: 1a3bfcec003a4827b75c28cc02a233fe65d952a1 https://github.com/galaxyproject/usegalaxy-playbook/commit/1a3bfcec003a4827b... Author: Nate Coraor nate@bx.psu.edu Date: 2017-06-15 (Thu, 15 Jun 2017)
Changed paths: M env/test/group_vars/galaxyservers/vars.yml
Log Message: ----------- I forget why these variable names have changed but apparently I didn't finish changing them
Commit: 5b00fa5d5c55915aaac7f440b1f074216be6a148 https://github.com/galaxyproject/usegalaxy-playbook/commit/5b00fa5d5c55915aa... Author: Nate Coraor nate@bx.psu.edu Date: 2017-06-16 (Fri, 16 Jun 2017)
Changed paths: M env/common/templates/supervisor/galaxy_datamanager.j2 M env/test/files/galaxy/var/integrated_tool_panel.xml M env/test/files/galaxy/var/shed_data_manager_conf.xml M env/test/files/galaxy/var/shed_tool_conf.xml M env/test/files/galaxy/var/shed_tool_data_table_conf.xml M env/test/group_vars/galaxyservers/vars.yml M env/test/templates/galaxy/config/job_conf.xml.j2
Log Message: ----------- Fixes for Data Managers, plus allocate 128GB of memory for the RNA STAR DM
Commit: 3fbe6d1d53f295cbe7b7a877db72d4a4c706ec4c https://github.com/galaxyproject/usegalaxy-playbook/commit/3fbe6d1d53f295cbe... Author: Nate Coraor nate@bx.psu.edu Date: 2017-06-21 (Wed, 21 Jun 2017)
Changed paths: M env/test/templates/galaxy/config/job_conf.xml.j2
Log Message: ----------- Run RNA Star on multi partition on TEst
Commit: c06cee0e218843b77ca86bab23007f16cfaa106a https://github.com/galaxyproject/usegalaxy-playbook/commit/c06cee0e218843b77... Author: Nate Coraor nate@bx.psu.edu Date: 2017-06-22 (Thu, 22 Jun 2017)
Changed paths: M env/common/files/galaxy/dynamic_rules/bridges_select.py A env/test/files/galaxy/config/pulsar_bridges_actions.yml M env/test/group_vars/galaxyservers/vars.yml M env/test/templates/galaxy/config/job_conf.xml.j2
Log Message: ----------- Run RNA Star on Bridges on Test, configure data path rewrites.
Commit: 5f46d03b2050f4bdb89ca8364c3ea4a72314cd9c https://github.com/galaxyproject/usegalaxy-playbook/commit/5f46d03b2050f4bdb... Author: Nate Coraor nate@bx.psu.edu Date: 2017-06-22 (Thu, 22 Jun 2017)
Log Message: ----------- Manually upgraded Test galaxy-lib on Jetstream from 16.7.7 to 17.9.1. No committable changes.
Commit: 49a63ad338ca092dd8739bc1d650d645e00bc6fd https://github.com/galaxyproject/usegalaxy-playbook/commit/49a63ad338ca092dd... Author: Nate Coraor nate@bx.psu.edu Date: 2017-06-22 (Thu, 22 Jun 2017)
Changed paths: M env/common/files/galaxy/dynamic_rules/multi_dynamic_walltime.py M env/test/files/galaxy/config/job_resource_params_conf.xml M env/test/templates/galaxy/config/job_conf.xml.j2
Log Message: ----------- Hack RNA STAR into the terrible One Dynamic Rule To Rule Them All
Commit: bdcfa1009eb413827f509c6c1787a6418f6cb9f3 https://github.com/galaxyproject/usegalaxy-playbook/commit/bdcfa1009eb413827... Author: Nate Coraor nate@bx.psu.edu Date: 2017-07-12 (Wed, 12 Jul 2017)
Changed paths: M env/test/files/galaxy/var/integrated_tool_panel.xml M env/test/files/galaxy/var/shed_tool_conf.xml M env/test/group_vars/galaxyservers/vars.yml M roles/usegalaxy_swarmscale/files/instance M roles/usegalaxy_swarmscale/files/inventory.spawn
Log Message: ----------- Get swarm scale / swarm manager working for Test, update Test to new GIE images (Jupyter 17.05.1)
Commit: 4dd07fe64f3d15501701f84950ea46ca82f43b03 https://github.com/galaxyproject/usegalaxy-playbook/commit/4dd07fe64f3d15501... Author: Nate Coraor nate@bx.psu.edu Date: 2017-07-12 (Wed, 12 Jul 2017)
Changed paths: M env/test/group_vars/galaxyservers/vars.yml
Log Message: ----------- Update Jupyter version in Galaxy config for Test
Commit: 437643a11e6b5dfc33099a6fdf8864fa620b3326 https://github.com/galaxyproject/usegalaxy-playbook/commit/437643a11e6b5dfc3... Author: Nate Coraor nate@bx.psu.edu Date: 2017-07-12 (Wed, 12 Jul 2017)
Changed paths: M roles/usegalaxy_swarmscale/files/instance
Log Message: ----------- Return node names on swarm scale destruction
Commit: 001e2190f319f928f6858f540072bc264d0f849c https://github.com/galaxyproject/usegalaxy-playbook/commit/001e2190f319f928f... Author: Nate Coraor nate@bx.psu.edu Date: 2017-07-13 (Thu, 13 Jul 2017)
Changed paths: M env/test/group_vars/galaxyservers/vars.yml M roles/usegalaxy_swarmscale/files/inc_spawn.yml M roles/usegalaxy_swarmscale/files/inventory.spawn
Log Message: ----------- Swarm GIE fixes
Commit: 6d6da7427592691795bc94efed9441f278369338 https://github.com/galaxyproject/usegalaxy-playbook/commit/6d6da742759269179... Author: Nate Coraor nate@bx.psu.edu Date: 2017-07-16 (Sun, 16 Jul 2017)
Changed paths: M common_roles M env/common/templates/supervisor/galaxy_group.j2 M env/main/group_vars/dbservers/vault.yml M env/main/group_vars/ftpservers/vars.yml M env/main/group_vars/galaxyservers/vars.yml M env/main/group_vars/galaxywebservers.yml M env/main/inventory M env/test/group_vars/galaxyservers/vars.yml
Log Message: ----------- Supervisor and GIE path fixes
Commit: 4c72ad524957ea08ac8157f977ef0bb8c967278b https://github.com/galaxyproject/usegalaxy-playbook/commit/4c72ad524957ea08a... Author: Nate Coraor nate@bx.psu.edu Date: 2017-07-16 (Sun, 16 Jul 2017)
Changed paths: M env/common/files/galaxy/dynamic_rules/multi_dynamic_walltime.py M env/main/files/galaxy/config/job_resource_params_conf.xml A env/main/files/galaxy/config/pulsar_bridges_actions.yml M env/main/files/galaxy/config/tool_data_table_conf.xml M env/main/files/galaxy/var/integrated_tool_panel.xml M env/main/files/galaxy/var/shed_tool_data_table_conf.xml M env/main/group_vars/dbservers/vault.yml M env/main/group_vars/galaxyservers/vars.yml M env/main/group_vars/galaxywebservers.yml M env/main/templates/galaxy/config/job_conf.xml.j2 M env/test/group_vars/galaxyservers/vars.yml
Log Message: ----------- Merge branch 'master' into reorg
Conflicts: common/host_vars/galaxy-db-01.tacc.utexas.edu.yml env/common/files/galaxy/dynamic_rules/multi_dynamic_walltime.py env/main/files/galaxy/galaxy_version.yml env/main/files/galaxy/var/integrated_tool_panel.xml env/main/files/galaxy/var/shed_tool_data_table_conf.xml env/main/group_vars/galaxyservers/vars.yml env/main/host_vars/jetstream-iu0.galaxyproject.org.yml env/main/host_vars/jetstream-tacc0.galaxyproject.org.yml env/main/templates/galaxy/config/job_conf.xml.j2 env/main/templates/nginx/usegalaxy.j2 env/test/host_vars/br005.bridges.psc.edu.yml env/testtoolshed/group_vars/toolshedservers/vars.yml files/galaxy/usegalaxy.org/var/shed_data_manager_conf.xml production/files/interactive_environments/plugins/.ansible_ie_role_current_version production/files/interactive_environments/plugins/bam_iobio/config/bam_iobio.ini.sample production/files/interactive_environments/plugins/bam_iobio/static/js/bam_iobio.js production/files/interactive_environments/plugins/bam_iobio/templates/bam_iobio.mako production/files/interactive_environments/plugins/common/templates/ie.mako production/files/interactive_environments/plugins/jupyter/config/allowed_images.yml.sample production/files/interactive_environments/plugins/jupyter/config/jupyter.ini.sample production/files/interactive_environments/plugins/jupyter/config/jupyter.xml production/files/interactive_environments/plugins/jupyter/static/js/jupyter.js production/files/interactive_environments/plugins/jupyter/templates/jupyter.mako production/files/interactive_environments/plugins/neo/config/neo.ini.sample production/files/interactive_environments/plugins/neo/static/js/neo.js production/files/interactive_environments/plugins/neo/templates/neo.mako production/files/interactive_environments/plugins/phinch/config/phinch.ini.sample production/files/interactive_environments/plugins/phinch/static/js/phinch.js production/files/interactive_environments/plugins/phinch/templates/phinch.mako production/files/interactive_environments/plugins/rstudio/config/allowed_images.yml.sample production/files/interactive_environments/plugins/rstudio/config/rstudio.ini.sample production/files/interactive_environments/plugins/rstudio/static/js/rstudio.js production/files/interactive_environments/plugins/rstudio/templates/rstudio.mako production/files/interactive_environments/proxy/.ansible_ie_role_current_version production/files/interactive_environments/proxy/lib/mapper.js production/files/interactive_environments/proxy/package.json production/galaxy_version.yml production/group_vars/all.yml production/group_vars/galaxydbservers.yml production/group_vars/galaxywebservers.yml production/secret_vars/galaxydbservers.yml stage/inventory
Commit: 00d29581d31378bb0c56277950aeef63641316b6 https://github.com/galaxyproject/usegalaxy-playbook/commit/00d29581d31378bb0... Author: Nate Coraor nate@bx.psu.edu Date: 2017-07-16 (Sun, 16 Jul 2017)
Changed paths: M env/test/group_vars/galaxyservers/vars.yml
Log Message: ----------- Remove duplicate definition
Compare: https://github.com/galaxyproject/usegalaxy-playbook/compare/0638aacc35f6...0...