# HG changeset patch -- Bitbucket.org # Project galaxy-dist # URL http://bitbucket.org/galaxy/galaxy-dist/overview # User Dan Blankenberg dan@bx.psu.edu # Date 1280371288 14400 # Node ID 9780508ee0c31b132158842afcae6c5ef90028a7 # Parent 75e99661d24caaeda1381b14cd062ffdcf7c3ecd Allow interval to bedstrict converter to work on bed files that may have e.g. a 'track' line.
--- a/lib/galaxy/datatypes/converters/interval_to_bedstrict_converter.py +++ b/lib/galaxy/datatypes/converters/interval_to_bedstrict_converter.py @@ -81,8 +81,8 @@ def __main__(): first_skipped_line = count + 1 continue fields = line.split('\t') - assert len( fields ) >= 3, 'A BED file requires at least 3 columns' #we can't fix this try: + assert len( fields ) >= 3, 'A BED file requires at least 3 columns' #we can't fix this if len(fields) > 12: strict_bed = False break