1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/dc08c095b1a5/ Changeset: dc08c095b1a5 User: greg Date: 2013-04-25 22:38:00 Summary: More tool shed dictionary fixes. Affected #: 1 file
diff -r e3fae8e819f24eb43e555f857a15a77a1584b84e -r dc08c095b1a53fab468b21706889e3a87400648f lib/galaxy/webapps/tool_shed/util/container_util.py --- a/lib/galaxy/webapps/tool_shed/util/container_util.py +++ b/lib/galaxy/webapps/tool_shed/util/container_util.py @@ -1027,10 +1027,10 @@ for passed_tests_dict in passed_tests_dicts: passed_test_id += 1 passed_test = PassedTest( id=passed_test_id, - stderr=passed_tests_dict[ 'stderr' ], - test_id=passed_tests_dict[ 'test_id' ], - tool_id=passed_tests_dict[ 'tool_id' ], - tool_version=passed_tests_dict[ 'tool_version' ] ) + stderr=passed_tests_dict.get( 'stderr', '' ), + test_id=passed_tests_dict.get( 'test_id' '' ), + tool_id=passed_tests_dict.get( 'tool_id', '' ), + tool_version=passed_tests_dict.get( 'tool_version', '' ) ) folder.passed_tests.append( passed_test ) failed_tests_dicts = tool_test_results_dict[ 'failed_tests' ] if failed_tests_dicts: @@ -1047,7 +1047,7 @@ tool_version=failed_tests_dict.get( 'tool_version', '' ), traceback=failed_tests_dict.get( 'traceback', '' ) ) folder.failed_tests.append( failed_test ) - missing_test_components_dicts = tool_test_results_dict[ 'missing_test_components' ] + missing_test_components_dicts = tool_test_results_dict.get( 'missing_test_components', [] ) if missing_test_components_dicts: folder_id += 1 folder = Folder( id=folder_id, key='missing_test_components', label='Tools missing tests or test data', parent=test_results_folder ) @@ -1056,10 +1056,10 @@ for missing_test_components_dict in missing_test_components_dicts: missing_test_component_id += 1 missing_test_component = MissingTestComponent( id=missing_test_component_id, - missing_components=missing_test_components_dict[ 'missing_components' ], - tool_guid=missing_test_components_dict[ 'tool_guid' ], - tool_id=missing_test_components_dict[ 'tool_id' ], - tool_version=missing_test_components_dict[ 'tool_version' ] ) + missing_components=missing_test_components_dict.get( 'missing_components', '' ), + tool_guid=missing_test_components_dict.get( 'tool_guid', '' ), + tool_id=missing_test_components_dict.get( 'tool_id', '' ), + tool_version=missing_test_components_dict.get( 'tool_version', '' ) ) folder.missing_test_components.append( missing_test_component ) else: tool_test_results_root_folder = None @@ -1098,10 +1098,10 @@ steps = 'unknown' workflow_id += 1 workflow = Workflow( id=workflow_id, - workflow_name=workflow_dict[ 'name' ], + workflow_name=workflow_dict.get( 'name', '' ), steps=steps, - format_version=workflow_dict[ 'format-version' ], - annotation=workflow_dict[ 'annotation' ], + format_version=workflow_dict.get( 'format-version', '' ), + annotation=workflow_dict.get( 'annotation', '' ), repository_metadata_id=repository_metadata_id, repository_id=repository_id ) folder.workflows.append( workflow )
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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