1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/16bf4453c97a/ Changeset: 16bf4453c97a User: jmchilton Date: 2014-05-24 00:20:55 Summary: Add some more colllection creation logging. Bug report from takadonet of collection request with 280 items only creating 60 - want to know if request got chopped off by proxy or paste, there was some logic error in my code, or if it hit some sort of db/transaction limit. This logging should help dianose that (hopefully). If I find the bug, I will remove this extra logging. Affected #: 2 files
diff -r f04bc600a672c5495dc7c7356bffcf436f843a93 -r 16bf4453c97a108105930e7f5d6cbf39151316fd lib/galaxy/dataset_collections/__init__.py --- a/lib/galaxy/dataset_collections/__init__.py +++ b/lib/galaxy/dataset_collections/__init__.py @@ -76,6 +76,7 @@ trans.sa_session.add( output_dataset )
dataset_collection_instance.implicit_output_name = implicit_collection_info[ "implicit_output_name" ] + log.debug("Created collection with %d elements" % ( len( dataset_collection_instance.collection.elements ) ) ) # Handle setting hid parent.add_dataset_collection( dataset_collection_instance ) elif isinstance( parent, model.LibraryFolder ):
diff -r f04bc600a672c5495dc7c7356bffcf436f843a93 -r 16bf4453c97a108105930e7f5d6cbf39151316fd lib/galaxy/dataset_collections/util.py --- a/lib/galaxy/dataset_collections/util.py +++ b/lib/galaxy/dataset_collections/util.py @@ -2,6 +2,9 @@ from galaxy import web from galaxy import model
+import logging +log = logging.getLogger( __name__ ) + ERROR_MESSAGE_UNKNOWN_SRC = "Unknown dataset source (src) %s." ERROR_MESSAGE_NO_NESTED_IDENTIFIERS = "Dataset source new_collection requires nested element_identifiers for new collection." ERROR_MESSAGE_NO_NAME = "Cannot load invalid dataset identifier - missing name - %s" @@ -32,6 +35,7 @@ """ Scan through the list of element identifiers supplied by the API consumer and verify the structure is valid. """ + log.debug( "Validating %d element identifiers for collection creation." % len( element_identifiers ) ) for element_identifier in element_identifiers: if "__object__" in element_identifier: message = ERROR_MESSAGE_INVALID_PARAMETER_FOUND % ( "__model_object__", element_identifier )
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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