1 new changeset in galaxy-central:
http://bitbucket.org/galaxy/galaxy-central/changeset/a3fc507f2b42/ changeset: a3fc507f2b42 user: greg date: 2011-07-14 21:58:06 summary: Another patch from Assaf Gordon for the cleanup_datasets.py script. This patch adds messages for the "purge histories" step: 1. A message is printed when processing a new history (so that the user can tell to which history the following dataset/hda messages belong). 2. in "info_only" mode, a message is printed about each deleted history 3. in "info_only" mode, a message is printed for each HDA that is checked 4. The message for HDA is changed to include the associated dataset id. affected #: 1 file (784 bytes)
--- a/scripts/cleanup_datasets/cleanup_datasets.py Thu Jul 14 14:25:29 2011 -0400 +++ b/scripts/cleanup_datasets/cleanup_datasets.py Thu Jul 14 15:58:06 2011 -0400 @@ -170,6 +170,7 @@ app.model.History.table.c.update_time < cutoff_time ) ) \ .options( eagerload( 'datasets' ) ) for history in histories: + print "### Processing history id %d (%s)" % (history.id, history.name) for dataset_assoc in history.datasets: _purge_dataset_instance( dataset_assoc, app, remove_from_disk, info_only = info_only ) #mark a DatasetInstance as deleted, clear associated files, and mark the Dataset as deleted if it is deletable if not info_only: @@ -182,6 +183,8 @@ history.purged = True app.sa_session.add( history ) app.sa_session.flush() + else: + print "History id %d will be purged (without 'info_only' mode)" % history.id history_count += 1 stop = time.time() print 'Purged %d histories.' % history_count @@ -364,15 +367,24 @@ # A dataset_instance is either a HDA or an LDDA. Purging a dataset instance marks the instance as deleted, # and marks the associated dataset as deleted if it is not associated with another active DatsetInstance. if not info_only: - print "Marking as deleted: ", dataset_instance.__class__.__name__, " id ", dataset_instance.id + print "Marking as deleted: %s id %d (for dataset id %d)" % \ + ( dataset_instance.__class__.__name__, dataset_instance.id, dataset_instance.dataset.id ) dataset_instance.mark_deleted( include_children = include_children ) dataset_instance.clear_associated_files() app.sa_session.add( dataset_instance ) app.sa_session.flush() app.sa_session.refresh( dataset_instance.dataset ) + else: + print "%s id %d (for dataset id %d) will be marked as deleted (without 'info_only' mode)" % \ + ( dataset_instance.__class__.__name__, dataset_instance.id, dataset_instance.dataset.id ) if is_deletable or _dataset_is_deletable( dataset_instance.dataset ): # Calling methods may have already checked _dataset_is_deletable, if so, is_deletable should be True _delete_dataset( dataset_instance.dataset, app, remove_from_disk, info_only=info_only, is_deletable=is_deletable ) + else: + if info_only: + print "Not deleting dataset ", dataset_instance.dataset.id, " (will be possibly deleted without 'info_only' mode)" + else: + print "Not deleting dataset %d (shared between multiple histories/libraries, at least one not deleted)" % dataset_instance.dataset.id #need to purge children here if include_children: for child in dataset_instance.children:
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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