1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/changeset/524e481298fa/ changeset: 524e481298fa user: greg date: 2012-08-31 20:03:40 summary: Add new repository tip column to tool shed repository grids, and differentiate between the repository tip revision and the repository's metadata revisions and installable revisions in various grids. affected #: 2 files
diff -r b822f138cd9785243d20bf32c9e02d4dfda22d80 -r 524e481298fa0977990d83bce92880caf05ceb06 lib/galaxy/webapps/community/controllers/common.py --- a/lib/galaxy/webapps/community/controllers/common.py +++ b/lib/galaxy/webapps/community/controllers/common.py @@ -514,6 +514,12 @@ else: rev = '-1' changeset_tups.append( ( rev, changeset_revision ) ) + if len( changeset_tups ) == 1: + changeset_tup = changeset_tups[ 0 ] + current_changeset_revision = changeset_tup[ 1 ] + if current_changeset_revision == before_changeset_revision: + return INITIAL_CHANGELOG_HASH + return current_changeset_revision previous_changeset_revision = None current_changeset_revision = None for changeset_tup in sorted( changeset_tups ):
diff -r b822f138cd9785243d20bf32c9e02d4dfda22d80 -r 524e481298fa0977990d83bce92880caf05ceb06 lib/galaxy/webapps/community/controllers/repository.py --- a/lib/galaxy/webapps/community/controllers/repository.py +++ b/lib/galaxy/webapps/community/controllers/repository.py @@ -9,9 +9,9 @@ from galaxy.web.framework.helpers import time_ago, iff, grids from galaxy.util.json import from_json_string, to_json_string from galaxy.model.orm import * -from galaxy.util.shed_util import create_repo_info_dict, get_changectx_for_changeset, get_configured_ui, get_repository_file_contents, load_tool_from_config -from galaxy.util.shed_util import NOT_TOOL_CONFIGS, open_repository_files_folder, reversed_lower_upper_bounded_changelog, reversed_upper_bounded_changelog -from galaxy.util.shed_util import strip_path, to_html_escaped, update_repository, url_join +from galaxy.util.shed_util import create_repo_info_dict, get_changectx_for_changeset, get_configured_ui, get_repository_file_contents, INITIAL_CHANGELOG_HASH +from galaxy.util.shed_util import load_tool_from_config, NOT_TOOL_CONFIGS, open_repository_files_folder, reversed_lower_upper_bounded_changelog +from galaxy.util.shed_util import reversed_upper_bounded_changelog, strip_path, to_html_escaped, update_repository, url_join from galaxy.tool_shed.encoding_util import * from common import *
@@ -109,14 +109,23 @@ class NameColumn( grids.TextColumn ): def get_value( self, trans, grid, repository ): return repository.name - class RevisionColumn( grids.GridColumn ): + class MetadataRevisionColumn( grids.GridColumn ): def __init__( self, col_name ): grids.GridColumn.__init__( self, col_name ) def get_value( self, trans, grid, repository ): - """Display a SelectField whose options are the changeset_revision strings of all downloadable_revisions of this repository.""" + """Display a SelectField whose options are the changeset_revision strings of all revisions of this repository.""" + # A repository's metadata revisions may not all be installable, as some may contain only invalid tools. select_field = build_changeset_revision_select_field( trans, repository, downloadable_only=False ) if len( select_field.options ) > 1: return select_field.get_html() + elif len( select_field.options ) == 1: + return select_field.options[ 0 ][ 0 ] + return '' + class TipRevisionColumn( grids.GridColumn ): + def __init__( self, col_name ): + grids.GridColumn.__init__( self, col_name ) + def get_value( self, trans, grid, repository ): + """Display the repository tip revision label.""" return repository.revision class DescriptionColumn( grids.TextColumn ): def get_value( self, trans, grid, repository ): @@ -169,7 +178,8 @@ DescriptionColumn( "Synopsis", key="description", attach_popup=False ), - RevisionColumn( "Revision" ), + MetadataRevisionColumn( "Metadata Revisions" ), + TipRevisionColumn( "Tip Revision" ), CategoryColumn( "Category", model_class=model.Category, key="Category.name", @@ -294,7 +304,9 @@ select_field = build_changeset_revision_select_field( trans, repository, downloadable_only=True ) if len( select_field.options ) > 1: return select_field.get_html() - return repository.revision + elif len( select_field.options ) == 1: + return select_field.options[ 0 ][ 0 ] + return '' title = "Valid repositories" columns = [ RepositoryListGrid.NameColumn( "Name", @@ -303,7 +315,7 @@ RepositoryListGrid.DescriptionColumn( "Synopsis", key="description", attach_popup=False ), - RevisionColumn( "Revision" ), + RevisionColumn( "Installable Revisions" ), RepositoryListGrid.UserColumn( "Owner", model_class=model.User, attach_popup=False ), @@ -657,11 +669,13 @@ if operation == "preview_tools_in_changeset": repository_id = kwd.get( 'id', None ) repository = get_repository( trans, repository_id ) + repository_metadata = get_latest_repository_metadata( trans, repository.id ) + latest_installable_changeset_revision = repository_metadata.changeset_revision return trans.response.send_redirect( web.url_for( controller='repository', action='preview_tools_in_changeset', webapp=webapp, repository_id=repository_id, - changeset_revision=repository.tip ) ) + changeset_revision=latest_installable_changeset_revision ) ) elif operation == "valid_repositories_by_category": # Eliminate the current filters if any exist. for k, v in kwd.items(): @@ -1601,16 +1615,27 @@ selected_value=changeset_revision, add_id_to_name=False, downloadable_only=False ) - revision_label = get_revision_label( trans, repository, changeset_revision ) - repository_metadata = get_repository_metadata_by_changeset_revision( trans, id, changeset_revision ) - if repository_metadata: - repository_metadata_id = trans.security.encode_id( repository_metadata.id ) - metadata = repository_metadata.metadata - is_malicious = repository_metadata.malicious - else: - repository_metadata_id = None - metadata = None - is_malicious = False + revision_label = get_revision_label( trans, repository, repository.tip ) + repository_metadata_id = None + metadata = None + is_malicious = False + if changeset_revision != INITIAL_CHANGELOG_HASH: + repository_metadata = get_repository_metadata_by_changeset_revision( trans, id, changeset_revision ) + if repository_metadata: + revision_label = get_revision_label( trans, repository, changeset_revision ) + repository_metadata_id = trans.security.encode_id( repository_metadata.id ) + metadata = repository_metadata.metadata + is_malicious = repository_metadata.malicious + else: + # There is no repository_metadata defined for the changeset_revision, so see if it was defined in a previous changeset in the changelog. + previous_changeset_revision = get_previous_downloadable_changset_revision( repository, repo, changeset_revision ) + if previous_changeset_revision != INITIAL_CHANGELOG_HASH: + repository_metadata = get_repository_metadata_by_changeset_revision( trans, id, previous_changeset_revision ) + if repository_metadata: + revision_label = get_revision_label( trans, repository, previous_changeset_revision ) + repository_metadata_id = trans.security.encode_id( repository_metadata.id ) + metadata = repository_metadata.metadata + is_malicious = repository_metadata.malicious if is_malicious: if trans.app.security_agent.can_push( trans.user, repository ): message += malicious_error_can_push
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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