1 new changeset in galaxy-central:
http://bitbucket.org/galaxy/galaxy-central/changeset/de06e2e6cc7f/ changeset: de06e2e6cc7f user: dan date: 2011-08-30 22:56:52 summary: Add basic VCF4.1 support. affected #: 1 file (78 bytes)
--- a/lib/galaxy_utils/sequence/vcf.py Tue Aug 30 15:52:10 2011 -0400 +++ b/lib/galaxy_utils/sequence/vcf.py Tue Aug 30 16:56:52 2011 -0400 @@ -55,9 +55,12 @@ def __init__( self, vcf_line, metadata, sample_names ): VariantCall33.__init__( self, vcf_line, metadata, sample_names)
+class VariantCall41( VariantCall40 ): + version = 'VCFv4.1' + #VCF Format version lookup dict VCF_FORMATS = {} -for format in [ VariantCall33, VariantCall40 ]: +for format in [ VariantCall33, VariantCall40, VariantCall41 ]: VCF_FORMATS[format.version] = format
class Reader( object ):
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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