1 new changeset in galaxy-central:
http://bitbucket.org/galaxy/galaxy-central/changeset/5c0412d06db9/ changeset: 5c0412d06db9 user: richard_burhans date: 2011-09-21 22:50:18 summary: aaChanges tool: Added an option to keep the columns from the SNP dataset affected #: 1 file (-1 bytes)
--- a/tools/evolution/codingSnps.xml Wed Sep 21 12:20:07 2011 -0400 +++ b/tools/evolution/codingSnps.xml Wed Sep 21 16:50:18 2011 -0400 @@ -2,7 +2,7 @@ <description>amino-acid changes caused by a set of SNPs</description><command interpreter="perl"> - codingSnps.pl $input1 $input2 Galaxy build=${input1.metadata.dbkey} loc=${GALAXY_DATA_INDEX_DIR}/codingSnps.loc chr=${input1.metadata.chromCol} start=${input1.metadata.startCol} end=${input1.metadata.endCol} snp=$col1 > $out_file1 + codingSnps.pl $input1 $input2 Galaxy build=${input1.metadata.dbkey} loc=${GALAXY_DATA_INDEX_DIR}/codingSnps.loc chr=${input1.metadata.chromCol} start=${input1.metadata.startCol} end=${input1.metadata.endCol} snp=$col1 keepColumns=$keep > $out_file1 </command><inputs> @@ -13,6 +13,10 @@ <param format="interval" name="input2" type="data" label="Gene dataset"><validator type="dataset_metadata_in_file" filename="codingSnps.loc" metadata_name="dbkey" metadata_column="0" message="Sequences are not currently available for the specified build." split="\t" /></param> + <param name="keep" type="select" label="Keep columns from SNP dataset"> + <option value="0" selected="true">No</option> + <option value="1">Yes</option> + </param></inputs><outputs>
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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