1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/9f31145b33ce/ Changeset: 9f31145b33ce User: carlfeberhard Date: 2013-11-26 18:28:17 Summary: HDA API: allow index filtering by deleted and/or visible Affected #: 1 file
diff -r f8f21ec94e5f9baa5718cbff313b085588ad7c5a -r 9f31145b33ceb83e539bcdd571b48ff440b4c1eb lib/galaxy/webapps/galaxy/api/history_contents.py --- a/lib/galaxy/webapps/galaxy/api/history_contents.py +++ b/lib/galaxy/webapps/galaxy/api/history_contents.py @@ -50,6 +50,7 @@ # otherwise, check permissions for the history first else: history = self.get_history( trans, history_id, check_ownership=True, check_accessible=True ) + # if ids, return _FULL_ data (as show) for each id passed if ids: ids = ids.split( ',' ) @@ -58,19 +59,39 @@ if encoded_hda_id in ids: #TODO: share code with show rval.append( self._detailed_hda_dict( trans, hda ) ) + # if no ids passed, return a _SUMMARY_ of _all_ datasets in the history else: + # details param allows a mixed set of summary and detailed hdas + #TODO: this is getting convoluted due to backwards compat details = kwd.get( 'details', None ) or [] if details and details != 'all': details = util.listify( details )
+ # by default return all datasets - even if deleted or hidden (defaulting the next switches to None) + # if specified return those datasets that match the setting + # backwards compat + return_deleted = util.string_as_bool_or_none( kwd.get( 'deleted', None ) ) + return_visible = util.string_as_bool_or_none( kwd.get( 'visible', None ) ) + for hda in history.datasets: + # if either return_ setting has been requested (!= None), skip hdas that don't match the request + if return_deleted is not None: + if( ( return_deleted and not hda.deleted ) + or ( not return_deleted and hda.deleted ) ): + continue + if return_visible is not None: + if( ( return_visible and not hda.visible ) + or ( not return_visible and hda.visible ) ): + continue + encoded_hda_id = trans.security.encode_id( hda.id ) if( ( encoded_hda_id in details ) or ( details == 'all' ) ): rval.append( self._detailed_hda_dict( trans, hda ) ) else: rval.append( self._summary_hda_dict( trans, history_id, hda ) ) + except Exception, e: # for errors that are not specific to one hda (history lookup or summary list) rval = "Error in history API at listing contents: " + str( e )
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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